Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31963
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0311 + 2345492-2346325                                           30   1.8  
04_03_0217 - 12769956-12770252,12770340-12770490,12770572-127708...    28   5.4  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    28   7.1  
07_01_1023 + 8840754-8842988,8843189-8843362                           27   9.4  
04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665...    27   9.4  

>12_01_0311 + 2345492-2346325
          Length = 277

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 548 LGRSPVCPYRARAAPPQXINDGVVAACT 631
           LGRS VCP    A P +  ++GVVA+ T
Sbjct: 250 LGRSNVCPLCRHALPVEEQDEGVVASST 277


>04_03_0217 -
           12769956-12770252,12770340-12770490,12770572-12770803,
           12770979-12771040,12771189-12771235,12771313-12771431,
           12771513-12771671,12771745-12771925,12772010-12772361,
           12772673-12772717,12772789-12772854,12772951-12773016,
           12773107-12773178,12773283-12773357,12773437-12773508,
           12774169-12774240,12774499-12774570,12776252-12776323,
           12776400-12776471,12776811-12776997,12778343-12778457
          Length = 861

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 593 AEQHVLGMGRPVIGPVGRTVYTAALQVCLYDINSLLDVLVYRILSNGSVQVA 438
           + Q++LG G    GPV +  +  A  + + ++     +LVY  L NGS+  A
Sbjct: 584 SSQNILGEGG--FGPVYKQYFVHAQNIHVTNLAGKTPLLVYEYLENGSLDQA 633


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 503 DINSLLDVLVYRILSNGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEEY*KRYYH 333
           D N L D+ +  +LSNG    AH  I  VR   +   A S  S     +E+ + +YH
Sbjct: 614 DDNELADLEL--LLSNGESLKAHTAIISVRCPKLLPSAKSLGSDGKITDEWGRSFYH 668


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 182 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIK 72
           A +Q++     ++K+E    ++ TG  T   H YS+K
Sbjct: 755 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVK 791


>04_03_1044 -
           21965237-21965341,21966130-21966300,21966414-21966564,
           21968768-21969348
          Length = 335

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 384 AVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCG 530
           AV +AG +  T L   V R  + +++ Y V+  V+ +ID+    +   G
Sbjct: 174 AVLLAGMVNVTTLSSKVYRQRDGTVSLYGVNSLVEASIDVSNCQMSPSG 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,105,624
Number of Sequences: 37544
Number of extensions: 352305
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)