Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31963
(633 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 89 4e-20
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 1.4
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 4.3
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 4.3
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 4.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.7
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 5.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.7
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 9.9
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 9.9
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 88.6 bits (210), Expect = 4e-20
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Frame = +3
Query: 102 GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXX 281
GM +KYL+F FN +FA+ GL IL +G+ + ++ E
Sbjct: 4 GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLGSII 62
Query: 282 XXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNAS 455
CCGA++E+HCM ITF+ FLL I + ++AV + + +K+ D ++
Sbjct: 63 FVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEI 122
Query: 456 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADWAD 557
Y ++ + ID IQ +LQCCG++S +D+ D
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYND 156
Score = 23.0 bits (47), Expect = 2.5
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = +1
Query: 568 PIPSTCCSAP 597
PIP++CC++P
Sbjct: 158 PIPASCCNSP 167
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.8 bits (49), Expect = 1.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 582 RARYGQTGDRPSRPDCLYRSIASLFV*YQ*SSGRSCLPDIE*WKRSG 442
+A TGD +P +Y+S + V Y +SC+ W +G
Sbjct: 137 KATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNG 183
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 595 GRSSTCSVWADR*SAQSAGLFIPQHCK 515
G CS+ DR S + G++ + CK
Sbjct: 105 GSKHLCSICGDRASGKHYGVYSCEGCK 131
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 595 GRSSTCSVWADR*SAQSAGLFIPQHCK 515
G CS+ DR S + G++ + CK
Sbjct: 105 GSKHLCSICGDRASGKHYGVYSCEGCK 131
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 4.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 556 SAQSAGLFIPQHCKSVCMISIVFWT 482
S+QSA + I + ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.8 bits (44), Expect = 5.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 59 IVLLRNKMIHTSAN 18
+V+ RNK +HT+ N
Sbjct: 76 VVIARNKSMHTATN 89
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.7
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 107 VLCKVPHVLLQ 139
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 181 PTIRMINPVMANRRLKQNMR 122
PT++ PV NR+L +++
Sbjct: 253 PTVQQHQPVTVNRQLNSDVQ 272
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 534 NSPADWADHRSAHTEHVLLRPRXSMTAS 617
NSP+ +DH +++ L P M +S
Sbjct: 123 NSPSFLSDHSRDQEQNLYLTPSPQMYSS 150
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,987
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 21
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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