Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31962
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    95   7e-21
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    71   1e-13
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    38   0.001
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    36   0.006
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.91 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   1.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    28   1.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   3.7  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    26   4.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   6.4  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   6.4  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    25   8.5  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.5  

>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
 Frame = +3

Query: 141 NREKWNSAAVVTPIVTSTTFKQPAPAEHTG-FEYGRSGNPTRNTLEECLAALDGGKYGLT 317
           N +++++++V  PI  S TFKQP   EH G F+Y RSGNPTR+ L+  LA L   K+   
Sbjct: 19  NEDQYHASSV--PIYQSATFKQPC-LEHMGKFDYTRSGNPTRSVLQVHLAKLMKAKHAFV 75

Query: 318 FASXXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIEKVKNA 497
            ++                H+V+  D+YGG++RLL     + G      D +++   + A
Sbjct: 76  TSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSDLAAFEAA 135

Query: 498 LQENTKMIWIETPTNPLLKVVDIEAIVK 581
           L+ +T ++ IE+PTNP + + DI AIVK
Sbjct: 136 LRPDTNLVLIESPTNPRISICDIRAIVK 163



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +2

Query: 584 SRGVAETLFVVVDNTFLTPYLQRPLYFGADIVMYSLTKYMNG 709
           +R  A+   +V+DNT L+P L  PL FG DIV  S TKY++G
Sbjct: 165 TRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSG 206


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
 Frame = +3

Query: 219 EHTGFEYGRSGNPTRNTLEECLAALDGGKYGL-TFASXXXXXXXXXXXXNHGDHIVSSDD 395
           +  G+ Y R  NPT +  E+ +AAL+ G   + T +               GD+IVS+  
Sbjct: 51  QEPGYIYSRMMNPTADVFEKRIAALEHGAAAIATSSGTSALFMALTTLAKAGDNIVSTSY 110

Query: 396 VYGGTNRLLRQVIARLGINTTFTDFTNIEKVKNALQENTKMIWIETPTNPLLKVVDIEAI 575
           +YGGT  L +  + RLGI T F +  +   +   + ENTK +++E+  NP+  V D E I
Sbjct: 111 LYGGTYNLFKVTLPRLGITTKFVNGDDPNDLAAQIDENTKAVYVESIGNPMYNVPDFERI 170

Query: 576 VK 581
            +
Sbjct: 171 AE 172



 Score = 34.7 bits (76), Expect = 0.014
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 611 VVVDNTFLTP-YLQRPLYFGADIVMYSLTKYMNG 709
           ++VDNTF    YL RP+  GADIV +S TK++ G
Sbjct: 181 LMVDNTFGGGGYLVRPIDHGADIVTHSATKWIGG 214


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +2

Query: 611 VVVDNTFLTPYLQRPLYFGADIVMYSLTKYMNG 709
           +VVD+TF  P +Q  L  GAD V++S TKY+ G
Sbjct: 184 LVVDSTFAPPPIQDALVLGADYVVHSATKYLAG 216



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +3

Query: 399 YGGTNRLLRQVIARLGINTTFTDFTNIEKVKNALQENTKMIWIETPTNPLLKVVDI 566
           Y GT +++ ++    G+ T+F     I+   +A+ E   +IW+ETP NPL    DI
Sbjct: 121 YSGTIQIIARINRLTGLETSF-----IDGKCDAIGEGD-VIWLETPLNPLGIAFDI 170


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +3

Query: 474 NIEKVKNALQENTKMIWIETPTNPLLKVVDIEAI 575
           ++ K++NA+ E TKMI I TP NPL K+   E +
Sbjct: 166 DMNKLRNAITEKTKMIVINTPHNPLGKIFSEEEL 199


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 453 TTFTDFTNIEKVKNALQENTKMIWIETPTNPLLKVV 560
           T + D  N EK    L +NT+   ++T  NPLL ++
Sbjct: 22  TIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLI 57


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 436 AITCLNSLFVPPYTSSED 383
           A TC N L +PPYTS +D
Sbjct: 732 AHTCFNRLDLPPYTSKKD 749


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 65  KLGWQITGFLKQKPGF-ATIAIHAGQEPGKMEFSSRGYTH 181
           KLG+ ++G+L   PGF +T  I++G       +S+R   H
Sbjct: 697 KLGFYMSGYLFDIPGFNSTQRIYSGNLSAIASYSTRNIAH 736


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 505  SCRAFFTFSIFVKSVNVVLIPNLAITCLNSLFVP 404
            +C+ F  + + V ++ + L+P  +  CL  LF P
Sbjct: 1277 TCQTFGFWCVTVLTIALCLLPRFSYICLQKLFYP 1310


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 436 AITCLNSLFVPPYTSSED 383
           A TC N L +PPY S E+
Sbjct: 636 AHTCFNRLDIPPYNSKEE 653


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 393 DVYGGTNRLLRQVIARLGINTT 458
           DVY   NRL  QVIA +G + T
Sbjct: 144 DVYSADNRLAEQVIASVGDDCT 165


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 168 VVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECLAALDGGKYGLTF 320
           V + ++  TTF Q  P+    +E     N T N L E   +L    YG  F
Sbjct: 479 VSSELLHMTTFTQSLPSGFKAYEIIPEPNVTGNALIELQESLHLDSYGFFF 529


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 99  KNLVLLLSLFTLAKNREKWNSAAVVTPIVTST 194
           +N    + LF L K+  +  S    TPI TST
Sbjct: 614 RNFQYFMGLFVLNKSSSRHESVERATPITTST 645


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 113 QNQVFALEIP*SAIPILFSTYLLSLHLRIYFL 18
           Q ++F+LE    AI +  ST+ L LH  + +L
Sbjct: 172 QEELFSLEKKGFAIDVRLSTFALGLHAGLKYL 203


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 447 INTTF-TDFTNIEKVKNALQENTKMIWIETPTNPLLKVVDIE 569
           +N  F T F+ ++  K   Q+ TK IW+    N  + V+D+E
Sbjct: 56  LNNLFGTSFSVMDASKR--QQTTKGIWLSKANNSPILVMDVE 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,368
Number of Sequences: 5004
Number of extensions: 67861
Number of successful extensions: 225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)