Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31962
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83106-5|CAB05492.1| 392|Caenorhabditis elegans Hypothetical pr... 152 2e-37
U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical p... 143 1e-34
Z81467-4|CAB03873.2| 451|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z81467-5|CAN86602.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical p... 30 2.0
AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical ... 30 2.0
Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z78417-2|CAB01692.1| 258|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL031621-5|CAA20930.1| 437|Caenorhabditis elegans Hypothetical ... 28 7.9
AF039044-4|AAG24122.3| 328|Caenorhabditis elegans Serpentine re... 28 7.9
>Z83106-5|CAB05492.1| 392|Caenorhabditis elegans Hypothetical
protein F22B8.6 protein.
Length = 392
Score = 152 bits (369), Expect = 2e-37
Identities = 80/198 (40%), Positives = 120/198 (60%), Gaps = 2/198 (1%)
Frame = +3
Query: 147 EKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECLAALDGGKYGLTFAS 326
E+W+ VV PI STT+KQ P E ++Y R GNPTR+ L++ LAAL+G K+ F+S
Sbjct: 19 EQWDINQVVPPISMSTTYKQDNPGEPKRYDYARGGNPTRDVLQKNLAALEGAKHCQAFSS 78
Query: 327 XXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQV-IARLGINTTFTDFTNIEKVKNALQ 503
NHGDHIV SDDVYGGT R +RQ+ + + G+ D T+++ ++ A++
Sbjct: 79 GLAASSAVINLLNHGDHIVCSDDVYGGTIRYIRQIAVKKYGMEVDSVDLTDVQNLEKAIK 138
Query: 504 ENTKMIWIETPTNPLLKVVDIEAIVKDREESRRHYSLL*TIPF*RRIY-KGLYISERTSL 680
NTKM+W E+P+NPLLKVVDI A+V+ + + ++ F + + L + ++
Sbjct: 139 PNTKMVWFESPSNPLLKVVDIAAVVQTAKRANPEIVVVVDNTFMTPYFQRPLSLGADIAV 198
Query: 681 CTR*RNI*MGHSDVIMGA 734
+ + I GHSD+IMGA
Sbjct: 199 HSITKYI-NGHSDIIMGA 215
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 605 LFVVVDNTFLTPYLQRPLYFGADIVMYSLTKYMNG 709
+ VVVDNTF+TPY QRPL GADI ++S+TKY+NG
Sbjct: 173 IVVVVDNTFMTPYFQRPLSLGADIAVHSITKYING 207
>U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical
protein ZK1127.10 protein.
Length = 392
Score = 143 bits (347), Expect = 1e-34
Identities = 75/197 (38%), Positives = 113/197 (57%), Gaps = 1/197 (0%)
Frame = +3
Query: 147 EKWNSAAVVTPIVTSTTFKQPAPAEHTGFEYGRSGNPTRNTLEECLAALDGGKYGLTFAS 326
E+W+ VV PI S+T+KQ P E G +Y R+GNPTR+ L++ LAAL+ K+ F+S
Sbjct: 19 EQWDMNQVVPPISLSSTYKQDNPGEPKGHDYSRAGNPTRDVLQKNLAALEDAKHCQVFSS 78
Query: 327 XXXXXXXXXXXXNHGDHIVSSDDVYGGTNRLLRQV-IARLGINTTFTDFTNIEKVKNALQ 503
+GDHIV SDDVYGGT R +R+V + G+ D T+++ ++ A++
Sbjct: 79 GLAATSAIINLLKYGDHIVCSDDVYGGTQRYIRRVAVPNHGLEVDSVDLTDVQNLEKAIK 138
Query: 504 ENTKMIWIETPTNPLLKVVDIEAIVKDREESRRHYSLL*TIPF*RRIYKGLYISERTSLC 683
NTKM+W E+P+NPLLKVVDI A+V+ +++ ++ F ++ +
Sbjct: 139 PNTKMVWFESPSNPLLKVVDIAAVVQTAKKANPEIVVVVDNTFMSPYFQRPISLGADVVV 198
Query: 684 TR*RNI*MGHSDVIMGA 734
GHSDV+MGA
Sbjct: 199 HSITKYINGHSDVVMGA 215
Score = 57.2 bits (132), Expect = 1e-08
Identities = 22/35 (62%), Positives = 31/35 (88%)
Frame = +2
Query: 605 LFVVVDNTFLTPYLQRPLYFGADIVMYSLTKYMNG 709
+ VVVDNTF++PY QRP+ GAD+V++S+TKY+NG
Sbjct: 173 IVVVVDNTFMSPYFQRPISLGADVVVHSITKYING 207
>Z81467-4|CAB03873.2| 451|Caenorhabditis elegans Hypothetical
protein C12C8.2a protein.
Length = 451
Score = 66.1 bits (154), Expect = 2e-11
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Frame = +3
Query: 156 NSAAVVTPIVTSTTFK-----QPAPAEH-TGFEYGRSGNPTRNTLEECLAALDGGKYGLT 317
N+ VV PI S+T++ Q H F Y R GNPT +E + ++GG L
Sbjct: 78 NADPVVVPIYHSSTYRFKTVDQFNEDNHGANFVYRRCGNPTTENVEVVINEIEGGAGSLL 137
Query: 318 FASXXXXXXXXXXXX-NHGDHIVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIE---- 482
+ S + G H++ + +Y GT+ + + +AR G+ T D +
Sbjct: 138 YNSGLAAISAVFLEFLSSGAHMIVMNPIYSGTSSFINETLARFGVEITSVDVEKEKDFAG 197
Query: 483 KVKNALQENTKMIWIETPTNPLLKVVDI 566
V+ A++ NTKMI+ E+ NP + V DI
Sbjct: 198 AVEKAIRPNTKMIYFESIANPTMAVPDI 225
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 605 LFVVVDNTFLTPYLQRPLYFGADIVMYSLTKYMNG 709
+ +D TF +PY +PL GADI ++S +KY+ G
Sbjct: 237 ILTCLDATFSSPYNIQPLKLGADISLHSCSKYIGG 271
>Z81467-5|CAN86602.1| 172|Caenorhabditis elegans Hypothetical
protein C12C8.2b protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = +3
Query: 156 NSAAVVTPIVTSTTFK-----QPAPAEH-TGFEYGRSGNPTRNTLEECLAALDGGKYGLT 317
N+ VV PI S+T++ Q H F Y R GNPT +E + ++GG L
Sbjct: 78 NADPVVVPIYHSSTYRFKTVDQFNEDNHGANFVYRRCGNPTTENVEVVINEIEGGAGSLL 137
Query: 318 FAS 326
+ S
Sbjct: 138 YNS 140
>Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 378 IVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIEKV 488
+VSS D Y G + LLRQ I + N T DFT+ E++
Sbjct: 98 VVSSSDEYSGGDGLLRQTIQK---NPTRFDFTDEEQM 131
>AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 378 IVSSDDVYGGTNRLLRQVIARLGINTTFTDFTNIEKV 488
+VSS D Y G + LLRQ I + N T DFT+ E++
Sbjct: 98 VVSSSDEYSGGDGLLRQTIQK---NPTRFDFTDEEQM 131
>Z69793-6|CAI46593.1| 424|Caenorhabditis elegans Hypothetical
protein R03A10.4b protein.
Length = 424
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 453 TTFTDFT-NIEKVKNALQENTKMIWIETPTNPLLKVVDIEAIVKDREESRRH 605
T+ + FT + +++ + E TKM+ I P NP K+ + K E +++H
Sbjct: 156 TSASQFTIDFADMESKINEKTKMLVINNPHNPTGKLFSRHELEKLAEIAKKH 207
>Z69793-5|CAA93673.2| 441|Caenorhabditis elegans Hypothetical
protein R03A10.4a protein.
Length = 441
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 453 TTFTDFT-NIEKVKNALQENTKMIWIETPTNPLLKVVDIEAIVKDREESRRH 605
T+ + FT + +++ + E TKM+ I P NP K+ + K E +++H
Sbjct: 173 TSASQFTIDFADMESKINEKTKMLVINNPHNPTGKLFSRHELEKLAEIAKKH 224
>U41109-1|ABC48251.1| 248|Caenorhabditis elegans Hypothetical
protein F52E1.5 protein.
Length = 248
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 621 STTTNNVSATPRDLXRSPQC 562
STTT+ V TP+ L +PQC
Sbjct: 108 STTTSTVKITPKPLRSTPQC 127
>Z78417-2|CAB01692.1| 258|Caenorhabditis elegans Hypothetical
protein C35C5.3b protein.
Length = 258
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 512 GVFLQGVLYFFNICKV-RKCSVDSQSCD 432
GVF+ GVL+F ++C V R S + S D
Sbjct: 16 GVFIIGVLFFMSVCDVLRTVSAEEHSHD 43
>AL031621-5|CAA20930.1| 437|Caenorhabditis elegans Hypothetical
protein F28H6.3 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 462 TDFT-NIEKVKNALQENTKMIWIETPTNPLLKVVDIEAIVKDREESRRHYSLL 617
+ FT + E+++ + + TKMI I P NP K+ E + + E R+Y L+
Sbjct: 159 SQFTIDFEELEKKINKRTKMIVINNPHNPTGKLFSREEL-QHIAELARNYDLI 210
>AF039044-4|AAG24122.3| 328|Caenorhabditis elegans Serpentine
receptor, class t protein17 protein.
Length = 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 666 PKYKGLCKYGVKKVLSTTTNNVSATPRDLXRSPQCQRLLIMDLLGSLSRSSW 511
P YK + G+ + ST ++++ + C L++ +LGSL SW
Sbjct: 79 PAYKTMIFLGICDICSTFVHSITTGIFGIMGVVYCDFPLVIFILGSLGLGSW 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,398,393
Number of Sequences: 27780
Number of extensions: 378452
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -