Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31959
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    29   0.72 
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    28   1.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.8  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   3.8  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.1  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 9   YCKNFKFGWAYSKSTLICTVKQILNTSILIENSQYGNVFSKLIIQNDCNLYIKINI 176
           Y  +  F + Y    + C +K+I+  +I +    Y +VFSKLII N    + +I+I
Sbjct: 5   YVFSNSFSFLYLMVNVQCRIKEIMYWNICL----YWDVFSKLIIYNKVCQFGRIHI 56


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 255 IFAYFFGSYISSYTNDRPHFL 193
           IF YFF S+ S  TN++P F+
Sbjct: 42  IFFYFFSSHKSKGTNEKPKFV 62


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -2

Query: 581 LNDNVSV-KSNFNTIFVKSIKTHLF 510
           LN+N+ V +S+F ++F+K +K HL+
Sbjct: 570 LNENLFVGQSSFKSVFLKWLKWHLY 594


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 336 FYCNIINNL*FLWENRLFKIHSLN 265
           FY  I N +  LW  +LF I+S+N
Sbjct: 142 FYYGIYNAVGLLWITKLFHIYSVN 165


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 3   IKYCKNFKFGWAYSKSTLICTVKQILNTSILIENSQYGNVFSKLIIQNDCNLY 161
           IK  +  K  W   +S L  +++ +++    I NSQ    FSK  ++    LY
Sbjct: 638 IKALREEKKAWKSEESELKSSIESLISQLESIRNSQIDIAFSKNQLELKLQLY 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,580
Number of Sequences: 5004
Number of extensions: 47750
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)