Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31959
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y14949-1|CAA75173.1|  277|Caenorhabditis elegans SURF-4 protein ...    28   6.2  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U58728-5|AAB00591.1|  277|Caenorhabditis elegans Surfeit homolog...    28   6.2  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    28   6.2  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Y14949-1|CAA75173.1|  277|Caenorhabditis elegans SURF-4 protein
           protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 416 LFFQWQHYENATTRNTFFCP*F*NSLDSIATLSIIYNFFGKIV 288
           ++FQW   +    + ++ C  F      IATL +IYNFFG+ +
Sbjct: 51  MYFQWDD-QKQFMQESWSCGWF------IATLFVIYNFFGQFI 86


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 133 NFENTFPYCEFSINILVFRICLTVQIRVDLEYAQP 29
           N EN  P C   +   VF  CL  ++R  L+ AQP
Sbjct: 448 NLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQP 482


>U58728-5|AAB00591.1|  277|Caenorhabditis elegans Surfeit homolog
           protein 4 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 416 LFFQWQHYENATTRNTFFCP*F*NSLDSIATLSIIYNFFGKIV 288
           ++FQW   +    + ++ C  F      IATL +IYNFFG+ +
Sbjct: 51  MYFQWDD-QKQFMQESWSCGWF------IATLFVIYNFFGQFI 86


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 133 NFENTFPYCEFSINILVFRICLTVQIRVDLEYAQP 29
           N EN  P C   +   VF  CL  ++R  L+ AQP
Sbjct: 619 NLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQP 653


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 133 NFENTFPYCEFSINILVFRICLTVQIRVDLEYAQP 29
           N EN  P C   +   VF  CL  ++R  L+ AQP
Sbjct: 358 NLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQP 392


>Z66494-2|CAA91257.1|  821|Caenorhabditis elegans Hypothetical
           protein C34C6.2 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 33  WAYSKSTLICTVKQILNTSILIENSQYGNVFSKLIIQND 149
           W ++   + C  K+IL  S L+    YG+ F K+ I ++
Sbjct: 298 WRHNVPIIECWAKKILGLSTLVCRKMYGDDFLKIDIVDE 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,671
Number of Sequences: 27780
Number of extensions: 253978
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)