Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31955
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   1.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.8  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.9  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 378 SPQVSNSNMYCRSF*ILEKSKTSYTLSNNLF 470
           S +VS+S+ Y RSF  +EK+ T   +S+N F
Sbjct: 332 SNKVSSSDFYTRSFEEIEKTFTFVEISDNEF 362


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 348  RGRCACLMY*S-PQVSNSNMYCRSF*ILEKSKTSYTLSNN 464
            R +  C+M+ S   +S+SN+      +LEK+K  +TL+ N
Sbjct: 1307 RAKVKCIMFGSLSTLSSSNIVSHLLKLLEKNKWIFTLNEN 1346


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 189 INFVTKSLLCSSHNDNKRLYFNLTYFLSLIFVLVIK*LKNKFWY 58
           I ++  +L   S ++ K L  +LTYF  L+FV+ +  L N F Y
Sbjct: 175 IAYLRFALRTMSFSNFKELVISLTYFWGLLFVIFL--LGNGFVY 216


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 56  KSLLCSSHNDNRRLYFNL 3
           +SLLCS HN  RRL+ ++
Sbjct: 95  QSLLCSEHNVPRRLHLSI 112



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 174 KSLLCSSHNDNKRLYFNLT 118
           +SLLCS HN  +RL+ +++
Sbjct: 95  QSLLCSEHNVPRRLHLSIS 113


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 441 TSYTLSNNLFEFSV----VYIMALL*SMKQKSDTKKKQNIYLY 557
           TSYT+SN L+ FS+    V I+  L  +++  +T+     YL+
Sbjct: 111 TSYTISNILWTFSIWLESVAILPQLFMLQRSGETESLTAHYLF 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,434
Number of Sequences: 5004
Number of extensions: 39322
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)