Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31955
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    28   5.1  
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    28   5.1  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    28   5.1  

>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 547 MFCFFLVSLFCFIDHNSAIIYTT 479
           + CF +VSL CF+  NS++I +T
Sbjct: 254 LICFMIVSLNCFLCPNSSLIPST 276


>06_01_0047 -
           429838-429960,430413-430508,430589-430596,431088-431141,
           431226-431274,431368-431466,431560-431639,431926-431989,
           432082-432255,432342-432965,433046-433189,433262-433372,
           433442-433498,433664-433798
          Length = 605

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 547 MFCFFLVSLFCFIDHNSAIIYTT 479
           + CF +VSL CF+  NS++I +T
Sbjct: 289 LICFMIVSLNCFLCPNSSLIPST 311


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 547 MFCFFLVSLFCFIDHNSAIIYTT 479
           + CF +VSL CF+  NS++I +T
Sbjct: 257 LICFMIVSLNCFLCPNSSLIPST 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,617
Number of Sequences: 37544
Number of extensions: 187173
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)