Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31953
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0778 - 36188675-36188922,36189154-36189214,36189531-361896...    29   2.7  
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280...    29   2.7  

>03_06_0778 -
          36188675-36188922,36189154-36189214,36189531-36189635,
          36189731-36189835,36189916-36189997,36190337-36190536,
          36190635-36190796,36190926-36191035,36191133-36191256,
          36191408-36191674
          Length = 487

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 66 PVSFPAGLDPEDPDLSG 16
          P S PAGL PE PDL+G
Sbjct: 35 PPSPPAGLSPEGPDLAG 51


>01_06_0886 +
           32725504-32725824,32725905-32726658,32727911-32728033,
           32729477-32729535,32731427-32731732,32732006-32732236,
           32732332-32732484,32732567-32732836
          Length = 738

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 75  WLLPVSFPAGLDPEDPDLSGCLFGG 1
           W LP S  A      PD+ GC+F G
Sbjct: 115 WQLPFSIVAATLSSQPDVDGCVFAG 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,923,265
Number of Sequences: 37544
Number of extensions: 35550
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)