Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31950
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    26   4.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   5.5  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.6  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.6  

>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 548 RMHRSLK*ERDMSNSAERGGRLCLFCRSLRALA 646
           R +RS    RD+ N A+RG +L     +LR LA
Sbjct: 217 RYNRSKSHFRDLDNIAKRGNQLGKLAMTLRTLA 249


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 384 SYKISLKQIKLKFSFEK*NYSISIFL 307
           +Y+++++Q K   SF+  NY+ ++FL
Sbjct: 17  NYELAIEQSKKALSFDANNYNANVFL 42


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 565 QIGERHVELCRTRRPIVPLLS-LVARSRFA 651
           ++G   ++LCR  RP +PLL   +  SRFA
Sbjct: 166 KLGSTFLKLCRVLRPNLPLLDPSLYISRFA 195


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 488 MYNVKNNNYIIVFMRTNKCNLINSIVI 408
           +YN+  +NY+ V+ R ++ + I+SI I
Sbjct: 491 LYNIGESNYLSVWRRIHEFDAISSIHI 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,135
Number of Sequences: 5004
Number of extensions: 51954
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)