Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31950
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0067 + 7986527-7986915,7987499-7987606,7987781-7988210           29   3.3  
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    29   4.3  
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           27   9.9  

>05_03_0067 + 7986527-7986915,7987499-7987606,7987781-7988210
          Length = 308

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 567 NRRETCRTLPNAAADCASFVARC 635
           N+  +CR LP+++A CA+  ARC
Sbjct: 3   NKGSSCRYLPHSSAPCATDGARC 25


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 381 MNIEKEVNGNYY*IDQVTFICTHKYNYVIIIFYIV 485
           +N+ + V GNYY ++Q  ++   KY   +++ + V
Sbjct: 724 LNLSQPVAGNYYPVNQGIYVADGKYELSVLVDHAV 758


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = -2

Query: 327 YSISIFL*RCHVQLPSVNRLYRQPIFSLLKLVTLTQKQAYLPVCDAL 187
           YS++IF+     ++  + RL  +   +L +++T+T    ++ +C AL
Sbjct: 293 YSLNIFMKNIFTEVGLLPRLDSEYHHTLQRMITMTAVHTFISLCGAL 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,153
Number of Sequences: 37544
Number of extensions: 269201
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)