Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31949
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    30   0.35 
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   2.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   7.6  

>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 306 SGKFEDLLIALLTPLPKFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIKQAYTAIY 485
           SG    LL+++L+       K  H     +G     LI V C  +  E+HSI   Y+ +Y
Sbjct: 12  SGSMHALLMSILSK------KSYHPTSYRVGGYRNQLIRVFCVWACIELHSINPWYSGMY 65


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -1

Query: 545 HQTIEISRCVTAYIVFKDFTINCCVCLFDAVDLIVGHSAHYFDEDAFVGTDPDHGLV 375
           HQ  E+ R +   +      + C  CL D  D +  HS        F+G+ P   LV
Sbjct: 171 HQYCEMVRSLLQSMGHSPELVQCITCLPDVADHLTSHSG--IKHITFIGSQPIAKLV 225


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 516  DTSGNFNRLMTSLCVGNRSEDFTVDQNRARDDARKLLQAGEL 641
            D +   N+ M S C   R EDF   Q++  D+   LLQ   L
Sbjct: 1510 DNAAEVNQFMLS-CFFCRWEDFLKQQHKLADEEASLLQFSRL 1550


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 354  KFYAKELHEAMVGIGTDEGVLIEVMCTMSNYEIHSIKQAYTAIYGKILEDD 506
            K  AK++ +       +E  + E M  MS++E+H + +++  +    L+DD
Sbjct: 868  KQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDD 918


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 24   LCNILISCFISKDIGEGKIMFPNQQSRPTV 113
            LC +     + K  G G +  PN +S PT+
Sbjct: 1255 LCAMRFFSLLRKSSGIGNLKIPNMKSNPTI 1284


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 40  LVVLFQRTSAKAKSCFLINNRDRLSSL*THSILARML 150
           L  +F      A S   INN ++  SL +HS L+  L
Sbjct: 755 LTKIFSEARKNAPSIIFINNVEKWPSLFSHSFLSMFL 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,602
Number of Sequences: 5004
Number of extensions: 59243
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)