Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31944
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   1.7  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   1.7  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    25   2.9  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   3.9  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   3.9  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    24   9.0  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    24   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   9.0  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    24   9.0  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 191 RTHCLSINQNTSGDLGFIDSFLWVTKHGC 105
           R+   S N NTS  L   DS+ +  KH C
Sbjct: 61  RSESNSCNGNTSSSLPCTDSYQYPLKHSC 89


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 200 FTERTHCLSINQNTSGDLGFID 135
           + +  HCL  + N +G+LGF++
Sbjct: 440 YLDDVHCLISSSNENGELGFVE 461


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 33  RFLIIS*EGRTPLRCTMITNVL*IAAVFCHPQKTIDKAQVTTC--ILIN*QAMRAFSKSV 206
           R +I++ E RTPL C    +V+ +A  +   Q    K+   +C  +L++ +  R   +S+
Sbjct: 171 RGIIVTSETRTPLECRAGFDVINLATFWDLKQDQARKSVGESCRSVLLHAETRRDTYRSI 230

Query: 207 CGHC 218
              C
Sbjct: 231 LNGC 234


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 109 AAIYSTFVIIVHLNGVRPS*LIIKNRI 29
           A + + F  I+H NGV P+ L +KN I
Sbjct: 348 AVVLAVFFGIMHQNGVIPAVLEVKNII 374


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 104 SSRVLSPTKNYR*SPSHHLYSD*LTSN 184
           S+  L  T+NY  SP +H+++  +T N
Sbjct: 297 STTALMATQNYVCSPEYHMFAHPVTQN 323


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
 Frame = -3

Query: 290 LLFSQSLASISSWKQKLNLPTHTLAMAAN*FTERTHCLSINQN--------TSGDLGFID 135
           LL  +   ++S W+++ +L  H L  +   + +R+H + + +N         +G LG +D
Sbjct: 585 LLTHRPNETVSIWERQTDLDVHALIPSLLSYNQRSH-VPVEENAAIRYLRYVTGVLGCVD 643

Query: 134 SFLWVTKHGCYL*YICYHSTS*RGTSLLANY*E 36
             +  T    +  Y C HS+S    S L NY E
Sbjct: 644 PSIHNT---LFCIYAC-HSSS--NESYLMNYIE 670


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 316 EYRLNSYNNYYLVNPSLPF 260
           E  L ++  Y+L NP LPF
Sbjct: 333 ENTLVAFGRYFLSNPDLPF 351


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 211  AIAKVCVGKFSFCFQLEMEARD*LNNSYYMNLTY 312
            A+A++C   FS     E+       NS + NLTY
Sbjct: 1356 AVARLCKQIFSLSPMFEVFVTQNYANSIFTNLTY 1389


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 60  VPLS*LLRIASPVWCDGRTC 1
           +P S  L +A+P+ C G TC
Sbjct: 142 IPESVPLEVAAPIMCAGITC 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,666
Number of Sequences: 5004
Number of extensions: 26271
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)