Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31944
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    29   1.4  

>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -1

Query: 208 QTDLLNARIACQLIRIQVVTWALSIVF------CG*QNTAAIYSTFVIIVHLNGVRPS*L 47
           QT+LLNA +   +I   ++ +  SIVF      CG Q  A I+S  V +  +    P+  
Sbjct: 243 QTELLNALVIQAIIPFALMHFPASIVFITPFFNCGNQTFARIFSVTVALYPVLDPLPTIF 302

Query: 46  IIK 38
           ++K
Sbjct: 303 VVK 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,924,404
Number of Sequences: 27780
Number of extensions: 144445
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)