Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31943
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   171   1e-43
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  171 bits (415), Expect = 1e-43
 Identities = 95/234 (40%), Positives = 116/234 (49%), Gaps = 2/234 (0%)
 Frame = +2

Query: 2   NHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 175
           N KDI  LY                    EL  PGS  L G+ Q+YN  ++AH       
Sbjct: 16  NAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFF 75

Query: 176 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 355
                      N LVPL++GAPD+A+PR+NN  F              + E G G G TV
Sbjct: 76  FIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTV 135

Query: 356 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 535
           YPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF  A+
Sbjct: 136 YPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAI 195

Query: 536 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 697
            IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPE
Sbjct: 196 MITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPE 249



 Score = 33.1 bits (72), Expect = 0.044
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 675 FDFLDILKVYILILPGFGIISHII 746
           F F    +VYILI+P FG++SHII
Sbjct: 242 FWFFGHPEVYILIMPAFGVVSHII 265


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 672 YFDFLDILKVYILILPGFGIISH 740
           Y D   +LK YI++LPG G+ +H
Sbjct: 392 YIDIAAVLKRYIMLLPG-GLFTH 413


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 280 TPTPLPYIINFKKNCRKWCRNRMNS 354
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,213
Number of Sequences: 5004
Number of extensions: 42532
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)