Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31938
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   1.8  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   2.4  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   3.1  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   5.5  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    25   7.3  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   9.6  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 274 GFWTTAWAASPLHS 233
           GFWT  W  +P+HS
Sbjct: 359 GFWTERWGDAPVHS 372


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 274 GFWTTAWAASPLHS 233
           GFWT  W  +P HS
Sbjct: 311 GFWTERWGDAPFHS 324


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 141 HFLHGRLFNHVCAVLQSTPRICVVSFVASLR 233
           HF H     +V  V+ S PRI V+ +VA  R
Sbjct: 309 HFAHLSTSLYVPEVMWSKPRILVMEYVAGAR 339


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 296 CSLDYDIGIN*CAINTCSTQWPCKCSHCSLSNCL 397
           C  +YD  +  C+++  S + PC+CS  +  +CL
Sbjct: 17  CYEEYDKKL--CSLSNDSWRRPCRCSLIAHESCL 48


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 165  NHVCAVLQSTPRICVVSFVASLRECSGEAAQAVVQNPGSNCKHVA--ALIMTLVSTSVQ* 338
            NH+  +L       ++S +  + E  GEA +A+V    SNC +++  ++   LVS++V+ 
Sbjct: 921  NHLAILLIQEQYAEMLSSLVDITEDEGEAVEAIVT---SNCVNLSENSIRAWLVSSAVE- 976

Query: 339  TLVQH 353
             L+Q+
Sbjct: 977  RLIQN 981


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 179 RAYVIKQSSMQEVRSYEVCLLFL 111
           + YV   SS  +V+SYE+C  F+
Sbjct: 207 KIYVATDSSPVDVQSYEICSDFI 229


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 320 YQCHNQGCNMFTIAPRILDYSLGSFSTTL 234
           Y       N   IA R+  ++  SFSTTL
Sbjct: 36  YSIEKLKSNRILIAVRLFSFAFSSFSTTL 64


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 210 VSFVASLRECSGEAAQAVVQNPGSNCKHVAALI 308
           +S V +L E    A  A++QNPG++   + A I
Sbjct: 649 ISLVKTLVEYYDTAVFAIMQNPGNDWDMIRACI 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,775
Number of Sequences: 5004
Number of extensions: 34346
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)