Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31938
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 1.3
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931... 29 1.8
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 28 3.1
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 28 4.1
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 28 4.1
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 28 4.1
08_02_0955 + 22994266-22995630 28 4.1
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 28 4.1
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608... 28 4.1
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 27 5.4
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788 27 7.2
08_02_1243 - 25527523-25527960,25527993-25528604 27 7.2
04_04_1305 - 32493704-32493799,32493897-32494265 27 7.2
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 335 INTCSTQWPCKCSHCSLSNCLGLF 406
++ CS + C C HCS N G F
Sbjct: 519 VDECSEKLACSCPHCSCKNTWGSF 542
>12_02_0718 +
22491241-22491897,22491989-22492126,22493017-22493142,
22493389-22493493,22493650-22494046,22494144-22494273,
22494358-22494652,22494736-22495005
Length = 705
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 248 SCPGCSPESWEQL*TCCSLDYDIGIN*CAINTCSTQWPCKCS 373
SC S + EQ+ T C +I + C +N + Q KCS
Sbjct: 442 SCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCS 483
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 313 VIIKAATCLQLLPGFWTTAWAASPLHSRRLATKE 212
V ++ + +Q +P FW TA+ + PL S L ++
Sbjct: 69 VYLRRSDVIQTIPDFWLTAFLSHPLLSELLTEED 102
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 338 NTCSTQWPCKCSHCSL-SNCLGLF 406
+TC P +CSHCS+ +NC+ F
Sbjct: 126 DTCMLYRPPRCSHCSICNNCVERF 149
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 338 NTCSTQWPCKCSHCSL-SNCLGLF 406
+TC P +CSHCS+ +NC+ F
Sbjct: 163 HTCMLYRPPRCSHCSICNNCVERF 186
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 338 NTCSTQWPCKCSHCSL-SNCLGLF 406
+TC P +CSHCS+ +NC+ F
Sbjct: 241 DTCMLYRPPRCSHCSICNNCVERF 264
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 168 HVCAVLQSTPRICVVSFVASLRECSGEAAQAVVQNP 275
H AVL STP V FVA+ +G A A + +P
Sbjct: 52 HNAAVLSSTPASAAVDFVAASDSDAGADADARLASP 87
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 338 NTCSTQWPCKCSHCSL-SNCLGLF 406
+TC P +CSHCS+ +NC+ F
Sbjct: 166 DTCMIYRPPRCSHCSICNNCVERF 189
>01_07_0024 -
40559423-40559863,40559959-40560192,40560546-40560842,
40561048-40561230,40561534-40561590,40561851-40561937
Length = 432
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 338 NTCSTQWPCKCSHCSL-SNCLGLF 406
+TC P +CSHCS+ +NC+ F
Sbjct: 172 DTCMLYRPPRCSHCSICNNCVERF 195
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 338 NTCSTQWPCKCSHCSL-SNCLGLF 406
+TC P +CSHCS+ +NC+ F
Sbjct: 201 HTCLLYRPPRCSHCSVCNNCVDRF 224
>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
Length = 1130
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 156 RLFNHVCAVLQSTPRICVVSFVASLRECSGEAAQAVVQNPG 278
R+FNH+ +LQS + +F L + + A +V+Q PG
Sbjct: 208 RIFNHLKHLLQSILPVLSTTFEEYLVSMNLKRATSVLQRPG 248
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/56 (30%), Positives = 21/56 (37%)
Frame = +3
Query: 120 EAYFVATHFLHGRLFNHVCAVLQSTPRICVVSFVASLRECSGEAAQAVVQNPGSNC 287
E ++ A HG A S PR C S + CS Q+ PGS C
Sbjct: 60 EGWWTAFVLYHGCWMTQQAATSVSLPRWCTPSSRGAPTMCSSPPTQSAAP-PGSRC 114
>04_04_1305 - 32493704-32493799,32493897-32494265
Length = 154
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 162 FNHVCAVLQSTPRICVVSFVASLRECSGEAAQAVVQNP 275
F H C++LQ R+C S C +A+ +V P
Sbjct: 68 FAHPCSLLQYIARVCACCLGLSDSFCDPKASSVLVPEP 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,642
Number of Sequences: 37544
Number of extensions: 226692
Number of successful extensions: 516
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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