Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31938
         (457 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82961-1|AAB41425.1|  125|Homo sapiens anti-HIV-1 gp120 V3 loop ...    29   10.0 

>U82961-1|AAB41425.1|  125|Homo sapiens anti-HIV-1 gp120 V3 loop
           antibody DO142-10 heavy chain variable region protein.
          Length = 125

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 362 CKCSHCSLSNCLGLFCYVG 418
           C  SHCS SNC GLF + G
Sbjct: 93  CARSHCSGSNCYGLFEHWG 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,977,121
Number of Sequences: 237096
Number of extensions: 1288488
Number of successful extensions: 7050
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7050
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)