Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31938
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   2.7  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   2.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.4  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 117 EEAYFVATHFLHGRLFNHVCAVL 185
           EE YF+    +  R+FN +C +L
Sbjct: 233 EEVYFLNMASVFMRIFNLICMML 255


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 248 SCPGCSPESWEQL 286
           +CP CSPE   Q+
Sbjct: 79  ACPQCSPEETRQI 91


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 248 SCPGCSPESWEQL 286
           +CP CSPE   Q+
Sbjct: 79  ACPQCSPEETRQI 91


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 335 INTCSTQWPCKCSHCSLSNC 394
           I TC+   P  C+H + + C
Sbjct: 424 IVTCTNCGPNPCTHTTTNGC 443


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 335 INTCSTQWPCKCSHCSLSNC 394
           I TC+   P  C+H + + C
Sbjct: 410 IVTCTNCGPNPCTHTTTNGC 429


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 335 INTCSTQWPCKCSHCSLSNC 394
           I TC+   P  C+H + + C
Sbjct: 444 IVTCTNCGPNPCTHTTTNGC 463


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 335 INTCSTQWPCKCSHCSLSNC 394
           I TC+   P  C+H + + C
Sbjct: 393 IVTCTNCGPNPCTHTTTNGC 412


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 366 SVLTVPYLIV*AYSVMLVCKYLIYCFI 446
           S +   Y+I  AY +ML+    +Y  +
Sbjct: 810 SYVDASYMIAFAYPIMLIVVCTVYAVL 836


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,714
Number of Sequences: 438
Number of extensions: 2517
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)