Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31935
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.91 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 314 PKSLILMNLDNFCRSHGQVPAT 379
           P+ L  +NL + CR HG  PAT
Sbjct: 430 PRELEAVNLGSACRIHGS-PAT 450



 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/48 (18%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISALVP*ILLSYL 208
           E+P    +  Y C  +  + ++    +RR   +  ++ ++P + +S+L
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/48 (18%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISALVP*ILLSYL 208
           E+P    +  Y C  +  + ++    +RR   +  ++ ++P + +S+L
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/48 (18%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  ELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISALVP*ILLSYL 208
           E+P    +  Y C  +  + ++    +RR   +  ++ ++P + +S+L
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 95  YACLKD*AMHVSVQAVLRRYREWLNISALVP*ILLSYL 208
           Y C  +    +     LRR   +  ++ +VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -3

Query: 337 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 230
           I+Q   L  +   +IG+ + +  +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,840
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)