Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31932
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   102   4e-23

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  102 bits (244), Expect = 4e-23
 Identities = 55/137 (40%), Positives = 69/137 (50%)
 Frame = +2

Query: 140 DIAFPPINNIRFXXXXXXXXXXXXRTIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 319
           D+A+P +NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL
Sbjct: 98  DVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSL 157

Query: 320 HLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILL 499
            L GISS                   S  Q+PLF  A+ IT+          AG + +L 
Sbjct: 158 QLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLF 217

Query: 500 TDRNLNTSFFDPAGGGD 550
           +DRNLNTSF+ P GGGD
Sbjct: 218 SDRNLNTSFYAPEGGGD 234



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 7   LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILXAPXYSIP 153
           L G+ Q+YN  ++AH                  N LVPL++ AP  + P
Sbjct: 54  LSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYP 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,218
Number of Sequences: 5004
Number of extensions: 25381
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)