Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31930
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    31   0.45 
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300...    28   3.2  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    27   7.3  

>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
            2590301-2590606,2590698-2590912,2591461-2591755,
            2591901-2592065,2592142-2592738,2593029-2593115,
            2593203-2593523,2594047-2596071
          Length = 1477

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 243  LVVQXRQVLPMVVHGAHCGYQGADAIHGGIQGLT 142
            L ++ RQ  P+V+HG  C ++G D I  GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265


>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
            3001969-3002274,3002365-3002579,3003047-3003341,
            3003487-3003651,3003745-3004341,3004855-3004941,
            3005022-3005342,3006218-3008242
          Length = 1474

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 243  LVVQXRQVLPMVVHGAHCGYQGADAIHGGIQGLT 142
            L ++ RQ  P+V+HG  C ++G   I  GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGHKI--GIVGRT 1265


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 94  TCHRWCRRLGRLEQWRSQPLDTSMDR 171
           TC R  RR    ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,104,314
Number of Sequences: 37544
Number of extensions: 210135
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)