Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31919
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   2.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   5.6  
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    25   5.6  
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    25   5.6  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   7.3  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   7.3  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 186 QNEALNTMLRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 365
           QN+++N  LR+I   ++   R Y    IP   +D    A     H  E F+ R  Q    
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719

Query: 366 KLVEDLK*RTPIEEKK 413
           K V++ K    I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -3

Query: 404 FNGCPSLQIFNKL----VFDNLTGSVEKIFYHVEEL-RIRTCRNIFELIWNLMT 258
           F G   +  FNKL    +FD++ G   K     +++ +  + +N +E +W   T
Sbjct: 641 FGGAKHIVYFNKLIINTIFDSVDGLTSKDATFAKQVEKKESLKNFWESLWKFFT 694


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 266 LMTSVCAAADIHSSWYDSQHCIEGFIL 186
           LM  V +A DIH+S +  +HC +  ++
Sbjct: 762 LMDDVFSALDIHTSNWIYKHCFQSSLM 788


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 293 YKCESEVLPHGRIFFPPSLSSCRRQAC 373
           Y CE ++        PP  ++CR++ C
Sbjct: 89  YNCEKQICRKCYARLPPRATNCRKKKC 115


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 293 YKCESEVLPHGRIFFPPSLSSCRRQAC 373
           Y CE ++        PP  ++CR++ C
Sbjct: 89  YNCEKQICRKCYARLPPRATNCRKKKC 115


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 392 PSLQIFNKLVFDNLTGSVEKIFY 324
           P   + NK+ FD+L  +  K+FY
Sbjct: 387 PRWMVTNKIKFDDLPDAYNKLFY 409


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 255 ASHEIPDKLKDIPTSANPKF 314
           AS+ +PD  ++ PT +NP F
Sbjct: 201 ASNNVPDFNQNYPTESNPMF 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,153
Number of Sequences: 5004
Number of extensions: 40016
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)