Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31919
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1072 - 23755657-23755662,23755964-23756137,23757144-237573...    31   0.45 
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677...    27   7.3  
02_01_0330 + 2325504-2325739,2326749-2327622                           27   7.3  
02_03_0210 + 16455879-16456068,16457494-16457648                       27   9.6  

>07_03_1072 -
           23755657-23755662,23755964-23756137,23757144-23757380,
           23758109-23758215,23758304-23758841
          Length = 353

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 22/68 (32%), Positives = 29/68 (42%)
 Frame = +1

Query: 121 KPPCCISRISPSQWFRRSRILFKMKPSIQCCESYQLE*MSAAAHTLVMRFQISSKIFLQV 300
           +P   + R  PS+WF  +RI  K    +  C S+  E      HTL   F I   IF  +
Sbjct: 189 RPDTILVRGVPSRWFAETRISSKASTLVMNCPSHFGE---LTPHTLF--FGILLPIFRNL 243

Query: 301 RIRSSSTW 324
            I S   W
Sbjct: 244 NISSDDEW 251


>02_05_0146 -
           26267245-26267339,26267427-26267469,26267589-26267725,
           26268172-26268299,26268419-26268495,26268593-26268679,
           26268817-26268933,26269115-26269165,26269383-26269497,
           26270033-26270292
          Length = 369

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 413 FLLFNGCPSLQIFNKL----VFDNLTGSVEKIFYHVEEL 309
           F +  G  ++Q F KL    + DN+     KIF H+EEL
Sbjct: 88  FCIIEGPETVQDFEKLDLQEIQDNIRSRRNKIFLHMEEL 126


>02_01_0330 + 2325504-2325739,2326749-2327622
          Length = 369

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 116 IISHHAASQEYRQVSGSAAQEFCSK*SPQY 205
           +  HHA++ E+++++    + FC+  +PQ+
Sbjct: 134 VSDHHASNLEFQEITTENVKIFCNADAPQF 163


>02_03_0210 + 16455879-16456068,16457494-16457648
          Length = 114

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -3

Query: 338 EKIFYHVEELRIRTCRNIFELIWNLMTSVCAAADIHSSW 222
           E+I  H+ ++    CR  F  I     S+C   ++   W
Sbjct: 76  EQISEHISDIPREICRQTFSKITGYNASLCKTGELEVPW 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,947
Number of Sequences: 37544
Number of extensions: 257011
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)