Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31910
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   3.4  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   4.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 264 PS*FLLDGAVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAI-PVMP 88
           P  F+  G VG S G   Y+S+     +E FS+       S ++ P+++  A+AI  V+P
Sbjct: 419 PPIFMFFGVVGISNGLVNYSSLIISEINENFSSVT----VSLLVAPIWVFDAIAILTVLP 474

Query: 87  IN 82
           ++
Sbjct: 475 LH 476


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 182 SARSWSTEVYCPVPGLVPTAPSSRN 256
           S+ +W T  Y  V    P APS RN
Sbjct: 438 SSPAWGTSGYYDVSSTSPVAPSDRN 462


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 378 TMRYS*VATAPNGIGERIPNAMPLANSKSLTISS 277
           T  Y   ++A N +G  +PN +PL  S+ LT S+
Sbjct: 521 TSLYQNASSADNNLGSSLPNVVPL--SRGLTQSN 552


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 340 PIGRGRNSTVPHR----AVQGLRPERLLVRLPATERRKQKLELKLSES 471
           P+   R S + HR     VQGL      +RLP      +KL +++ E+
Sbjct: 486 PVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQIFET 533


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 218 LDSTPRSTRSEPMSC-SARPTEPSVRVP 138
           LD    +  S P S  SA+PTEPSV  P
Sbjct: 167 LDRNSSTFGSNPNSVFSAQPTEPSVEPP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,349
Number of Sequences: 5004
Number of extensions: 41965
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)