Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31908
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 155 4e-39
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 72 4e-14
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 49 4e-07
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 42 4e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 38 7e-04
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 36 0.003
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 29 0.55
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 2.2
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 2.9
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz... 26 2.9
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 25 6.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.7
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 25 8.9
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 25 8.9
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 155 bits (376), Expect = 4e-39
Identities = 66/125 (52%), Positives = 97/125 (77%)
Frame = +1
Query: 82 MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDT 261
MSI+ YNGG+ VAM G++CVAIA+D R G+Q+ +++ NFPKVF MG Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 262 QTVFQRLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLDPYDNQPY 441
QT+++ ++++NLY+ +E R ++PKTF+ ++S+ LYE+RFGPYF PV+AG+ DN P+
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVS-NDNTPF 119
Query: 442 VCNMD 456
+C D
Sbjct: 120 ICGFD 124
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 461 IGCPNEPEDFVGSGTCSE 514
IGC + EDF+ SGT +E
Sbjct: 126 IGCIDFAEDFIVSGTATE 143
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 72.1 bits (169), Expect = 4e-14
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +1
Query: 100 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNF-PKVFQMGPTLYVGLPGLATDTQTVFQ 276
NGG VA+ G +A D R + ++T F P+V ++G L +G G D + +
Sbjct: 12 NGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVK 70
Query: 277 RLKFRMNLYELKENRMMRPKTFSAMLSNLLYERRFGPYFIEPVIAGLD 420
R++ R++LY R M ++ + M+ LLY +RF PY++ +AG+D
Sbjct: 71 RIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID 118
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 49.2 bits (112), Expect = 4e-07
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Frame = +1
Query: 103 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 282
G +V+A+K D V IA D + + ++ ++G VG G +D Q + QRL
Sbjct: 43 GSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI-QRL 101
Query: 283 KFRMNLYE--LKENRMMRPKTFSAMLSNLLYERR--FGPYFIEPVIAGLDPYDNQPYVCN 450
++ + E + ++P LS +LY RR PY+ + ++AG+D + +PYV
Sbjct: 102 LEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAF 161
Query: 451 MD 456
D
Sbjct: 162 AD 163
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 42.3 bits (95), Expect = 4e-05
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 103 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 282
G + A++ +D V +A D R + A + K+ Q+ ++ G A DTQTV L
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 283 KFRMNLYELKENRMMRPKTFSAMLSNLLYERR 378
K+ +++Y ++ T + + S + Y+ +
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNK 115
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 38.3 bits (85), Expect = 7e-04
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +1
Query: 103 GGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQRL 282
G +A++G +C+ I +++ + Q VS NF K+ + + + GL D + + +
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVS-NFQKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 283 KFRMNLYELKENRMMRPKTFSAMLSNLL--YERRFG--PYFIEPVIAGLDPYDNQPYV 444
+ ++L + + + ++ + Y + G P+ + +IAG D DN P V
Sbjct: 89 RVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRV 146
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/90 (25%), Positives = 37/90 (41%)
Frame = +1
Query: 100 NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLATDTQTVFQR 279
+G +A + Q + + D R S KV ++ P L L G A D Q
Sbjct: 60 HGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETV 119
Query: 280 LKFRMNLYELKENRMMRPKTFSAMLSNLLY 369
L L++L+ ++ S +LSN+ Y
Sbjct: 120 LGMECRLHQLRNKELISVSAASKILSNITY 149
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.7 bits (61), Expect = 0.55
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 GAVVAMKGQD-CVAIATDKRFGIQAQTVSTNFPKVFQMGPTLYVGLPGLAT 255
GA+ +D VA A D G+ S + +VF++G L VG+ G T
Sbjct: 407 GALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNT 457
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 10 IQYFELITLQ*FQVKKCLSFYITNMSIL----AYNGGAVVAMK 126
++YF+ + + +VK SF+I N +L AYNG V +K
Sbjct: 441 LKYFDQVVVGLKEVKDAFSFFIFNRFVLVYVPAYNGVDPVTLK 483
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 132 RLCGHRYGQAVWYTSSNSINQLPKSIPNGTHIV 230
RL G Y V Y+S NS+ LPK P+ H+V
Sbjct: 239 RLRGKTYDYKVEYSSINSLFLLPK--PDEQHVV 269
>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 180 NSINQLPKSIPNGTHIVCRPSRS 248
+S+ LP +P+G I C P RS
Sbjct: 84 HSLKDLPSEMPDGMVIACIPKRS 106
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 6.7
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +1
Query: 157 KRFGIQAQTVSTNFPKVFQ 213
+RFG+++ T++++F KVF+
Sbjct: 281 ERFGLKSTTIASSFGKVFR 299
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = -2
Query: 293 ILNFSL*NTVWVSVARPGRPTYNVGPIWNTFGKLVDTV*ACIPNR------LSVAMATQS 132
++NFS T + S P+ N P W+ + + +PN +V A
Sbjct: 449 VVNFSTPITNFFSKIYKDNPSLNP-PSWHLITLVHRNEKSSLPNLELYIDGSAVERAACP 507
Query: 131 WPFMATTAPPLYASI 87
+PF+++T PLY S+
Sbjct: 508 YPFLSSTLQPLYVSL 522
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 43 FQVKKCLSFYITNMSILAYNG 105
F VKKC F ++SI++Y+G
Sbjct: 144 FGVKKCGMFDYISLSIISYDG 164
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 211 GILLGSWLILFELVYQTACP 152
GI GS+ LF+L+Y+T P
Sbjct: 195 GISAGSYSALFQLIYETYHP 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,237
Number of Sequences: 5004
Number of extensions: 46930
Number of successful extensions: 123
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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