Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31907
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   5.5  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   7.3  
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    27   9.7  

>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 95  TWSNRHYVEIILVVINFNAWFLFWITDLFE 184
           +W+N  ++ ++  V+   +  LFW+T  FE
Sbjct: 458 SWNNWRWIWLVFAVLLIGSVILFWLTFQFE 487


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 47   KVYKKMLLHTYVHGYLTWSNRHYVEIILVV-INFNAWFLFWITDLFEIMVGV*HFFVRAF 223
            KVY       Y   YLT S   Y  ++LV+ + F    LF   +L   +V V        
Sbjct: 1061 KVYVYSTFFPYYEQYLTLSTTVYTLVVLVLFVAFVTISLFLRVNLAGSLVTVFVLLSSYL 1120

Query: 224  FIMEFIFVLKIQFTFFNV 277
             +ME++++L I     +V
Sbjct: 1121 HLMEWMYLLGITVNVVSV 1138


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 202 TFFCTCVFHNGIYFCLENSIYI 267
           T +CT V + GIY CL  +I +
Sbjct: 249 TTYCTSVTNTGIYSCLRTTIQL 270


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 202 TFFCTCVFHNGIYFCLENSIYI 267
           T +CT V + GIY CL  +I +
Sbjct: 249 TTYCTSVTNTGIYSCLRTTIQL 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,145
Number of Sequences: 27780
Number of extensions: 231128
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)