Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31906
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060...    72   5e-13
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898...    71   1e-12
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    31   1.2  
01_05_0413 + 21935030-21935437,21936844-21937590                       29   5.0  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    28   8.7  

>07_03_1795 +
           29603694-29605208,29605423-29605649,29605739-29606071,
           29606229-29606475,29606948-29607076,29607161-29607376,
           29607454-29607577,29608377-29608612
          Length = 1008

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
 Frame = +3

Query: 246 LVDAYRTYGHLKATIDNVDYRNESRNIKE-LHYSRYG-----LDPEETVDTGLLYGYSGN 407
           LV AY+  GH+KA +D +  R + R + + L  S YG     LD E  +    + G+  +
Sbjct: 111 LVRAYQVNGHMKAKLDPL--RLDDRAVPDDLDLSLYGFTEADLDREFFLGVWRMAGFLSD 168

Query: 408 N----SIKSLVDELVKIYCGHISYEFTHLESEAEREWFAQRIESG-VDPVENDRRIEILK 572
           N    +++ ++ +L + YCG I YE+ H+    +  W   +IE+  +     DRR+ +L 
Sbjct: 169 NRPVLTLREILSKLEQAYCGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRLVMLD 228

Query: 573 ELLHSQAWDKFLSIKYPTVKRYCGEGAE 656
            L+ S  ++ FL+ K+ T KR+  EG E
Sbjct: 229 RLIWSTQFENFLATKWATAKRFGLEGGE 256


>04_03_0741 +
           19187333-19188868,19189264-19189490,19189578-19189899,
           19190311-19190399,19190882-19191128,19191756-19191884,
           19191967-19192182,19192256-19192379,19192857-19193095
          Length = 1042

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
 Frame = +3

Query: 225 KNCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIKEL------HYSRYGLDPEETVDTGL 386
           ++ R   LV AY+  GHLKA +D +    E R I ++       +S   LD E  +    
Sbjct: 111 ESMRLLLLVRAYQVSGHLKAKLDPLAL--EERPIPDVLDPAFYGFSEADLDREFFLGVWR 168

Query: 387 LYGYSGNN----SIKSLVDELVKIYCGHISYEFTHLESEAEREWFAQRIES-GVDPVEND 551
           + G+   N    +++S+++ L + YCG I YE+ H+    +  W   RIE+        D
Sbjct: 169 MAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDREKCNWLRDRIETVNAREYSYD 228

Query: 552 RRIEILKELLHSQAWDKFLSIKYPTVKRYCGEGAE 656
           RR  +L  L+ S  ++ FL+ K+ T KR+  EGAE
Sbjct: 229 RRQVMLDRLMWSTQFESFLAQKWTTAKRFGLEGAE 263


>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = -2

Query: 247 SCCARQFLYLFDIMSSGISYSSAIVGRCPKTPA--------PEWYRTRSYK 119
           +CC RQF Y+  ++   +   SA V  C +           PEW+  R Y+
Sbjct: 384 TCCYRQFCYISSVLYGDLVSGSAKVQTCSRNKGLIFCSESEPEWWAMRKYR 434


>01_05_0413 + 21935030-21935437,21936844-21937590
          Length = 384

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 147 GAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVDAYRTYGHLKATIDNVDYRNES 317
           G G  G    + D + +   ++ + +K+      V    TYG  K T D  ++ NE+
Sbjct: 96  GPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEA 152


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 219  RYKNCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIKEL-HYSR-YGLDPEETVDTGLLY 392
            +++N     ++DA++ +G     + ++ YR+++ N+ +L H +R  GL          +Y
Sbjct: 2860 QWRNEMYNSVIDAFKDFGQTNPQLHHLGYRDKAWNVNKLAHIARKQGLPDVCVTILDKMY 2919

Query: 393  GYS 401
            G++
Sbjct: 2920 GHA 2922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,269,627
Number of Sequences: 37544
Number of extensions: 404787
Number of successful extensions: 1000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)