Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31906
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical pr...   103   2e-22
Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical p...   103   2e-22
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...    61   7e-10
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z49068-11|CAN86909.1|  151|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z49068-10|CAA88858.1|  296|Caenorhabditis elegans Hypothetical p...    28   5.9  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   5.9  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score =  103 bits (246), Expect = 2e-22
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 1/197 (0%)
 Frame = +3

Query: 138 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVDAYRTYGHLKATIDNVDYRNES 317
           Y  G GVFGH P       + E+      +N +   L++A+R YG+L+A +D +  R + 
Sbjct: 24  YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80

Query: 318 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAE 497
            ++ EL  + YGL  +E V         GN S+  L ++L  IYCG  + EF H+ +  E
Sbjct: 81  ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINNWEE 132

Query: 498 REWFAQRIESGV-DPVENDRRIEILKELLHSQAWDKFLSIKYPTVKRYCGEGAEXXXXXX 674
           R+W +Q  E+ + + +  +  + I   +L  + +DKFLS K+PT+KRY  EGAE      
Sbjct: 133 RQWISQNFENCIAEELRKEELLRIGDLMLKCENFDKFLSTKFPTLKRYGAEGAESMFAFF 192

Query: 675 XXXXXXXXXERIEQVIL 725
                    +++E++I+
Sbjct: 193 SELFEGAAEKQVEEIII 209


>Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score =  103 bits (246), Expect = 2e-22
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 1/197 (0%)
 Frame = +3

Query: 138 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVDAYRTYGHLKATIDNVDYRNES 317
           Y  G GVFGH P       + E+      +N +   L++A+R YG+L+A +D +  R + 
Sbjct: 24  YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80

Query: 318 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAE 497
            ++ EL  + YGL  +E V         GN S+  L ++L  IYCG  + EF H+ +  E
Sbjct: 81  ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINNWEE 132

Query: 498 REWFAQRIESGV-DPVENDRRIEILKELLHSQAWDKFLSIKYPTVKRYCGEGAEXXXXXX 674
           R+W +Q  E+ + + +  +  + I   +L  + +DKFLS K+PT+KRY  EGAE      
Sbjct: 133 RQWISQNFENCIAEELRKEELLRIGDLMLKCENFDKFLSTKFPTLKRYGAEGAESMFAFF 192

Query: 675 XXXXXXXXXERIEQVIL 725
                    +++E++I+
Sbjct: 193 SELFEGAAEKQVEEIII 209


>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
 Frame = +3

Query: 234 RAQQLVDAYRTYGHLKATIDNVDYRNESRNIK---ELHYSRYGL-----DPEETVDTGLL 389
           + Q L+ +Y+T GH  A +D +   +   +     EL  S YGL     D E  +     
Sbjct: 140 KIQLLIRSYQTRGHNIADLDPLGINSADLDDTIPPELELSFYGLGERDLDREFLLPPTTF 199

Query: 390 YGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAEREWFAQRIESG-VDPVENDRRIEI 566
                + +++ ++  L  IYC     E+ HL +  +++W  +R E+  V  + +D++  +
Sbjct: 200 ISEKKSLTLREILQRLKDIYCTSTGVEYMHLNNLEQQDWIRRRFEAPRVTELSHDQKKVL 259

Query: 567 LKELLHSQAWDKFLSIKYPTVKRYCGEGAE 656
            K L+ S  +++FL+ K+P+ KR+  EG E
Sbjct: 260 FKRLIRSTKFEEFLAKKWPSEKRFGLEGCE 289


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +3

Query: 444  IYCGHISYEFTHLESEAEREWFAQRIESGVDPVENDRRIEILKELLHSQAWDKFLSIKYP 623
            I+   +  +   +ES  E+E   ++ E    P+E+ +  E+L+ +L S     +L++   
Sbjct: 2776 IHISEVKNDDIAMESTKEKEKDKEKDEKDAHPLESRQTEEVLRHVLESYNALSWLNLNRQ 2835

Query: 624  TVKRY 638
            T  RY
Sbjct: 2836 TGDRY 2840


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +3

Query: 444  IYCGHISYEFTHLESEAEREWFAQRIESGVDPVENDRRIEILKELLHSQAWDKFLSIKYP 623
            I+   +  +   +ES  E+E   ++ E    P+E+ +  E+L+ +L S     +L++   
Sbjct: 2776 IHISEVKNDDIAMESTKEKEKDKEKDEKDAHPLESRQTEEVLRHVLESYNALSWLNLNRQ 2835

Query: 624  TVKRY 638
            T  RY
Sbjct: 2836 TGDRY 2840


>Z49068-11|CAN86909.1|  151|Caenorhabditis elegans Hypothetical
           protein K01C8.7b protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 586 EWSNSLRISILRSFSTGSTPLSMR*ANHSLSASDSKCVNS 467
           +W NSLR  I  +FSTGS  L+    +  +S S   C+ +
Sbjct: 87  QWYNSLRTKIYENFSTGS-KLANNLISGCISGSAIMCITN 125


>Z49068-10|CAA88858.1|  296|Caenorhabditis elegans Hypothetical
           protein K01C8.7a protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 586 EWSNSLRISILRSFSTGSTPLSMR*ANHSLSASDSKCVNS 467
           +W NSLR  I  +FSTGS  L+    +  +S S   C+ +
Sbjct: 87  QWYNSLRTKIYENFSTGS-KLANNLISGCISGSAIMCITN 125


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +3

Query: 444  IYCGHISYEFTHLESEAEREWFAQRIESGVDPVENDRRIEILKELLHSQAWDKFLSIKYP 623
            I+   +  +   +ES  E+E   ++ E    P+E+ +  E+L+ +L S     +L++   
Sbjct: 2776 IHISEVKNDDIAMESTKEKEKDKEKDEKDAHPLESRQTEEVLRHVLESYNALSWLNLNRQ 2835

Query: 624  TVKRY 638
            T  RY
Sbjct: 2836 TGDRY 2840


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -1

Query: 311 ISVVYVIYSSF*MS-VRTVSVDQLLRSAVLISL*YYVLWNLVFI 183
           + V Y+++ S   + +  VSV+ L  + VLI+L ++ L+N+++I
Sbjct: 71  VKVSYLVFVSACFNFILAVSVNSLQTNRVLIALLFFALFNVLYI 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,771
Number of Sequences: 27780
Number of extensions: 346836
Number of successful extensions: 943
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)