Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31903
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202           28   6.6  
08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575     28   8.8  

>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
          Length = 288

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 108 FRQQPHSPTHIKTGYIFCNILYKVTDTM 25
           FR +P  P H+K  ++ C + YK   T+
Sbjct: 150 FRLEPQ-PLHLKEDWVLCRVFYKTRQTI 176


>08_02_1107 + 24357113-24357288,24357530-24357590,24358736-24359575
          Length = 358

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 648 APHNRWEHEYYFVFSH 695
           AP  RWEH  Y+ F+H
Sbjct: 209 APWRRWEHNEYYSFAH 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,267
Number of Sequences: 37544
Number of extensions: 235843
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)