Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31901
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...   144   7e-36
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    30   0.34 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.44 
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    28   1.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.1  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   5.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.2  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   7.2  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   7.2  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   9.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.5  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score =  144 bits (350), Expect = 7e-36
 Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 3/201 (1%)
 Frame = +2

Query: 53  RLPERYGAGEKSVWVEYIQLAAEYK-PAXNLGQGFPDYHAPKHVTEALSQIATSENPLLH 229
           R   +  A    VW    Q  AE K P  +L QGF +Y+ PK V +A  +  + +    +
Sbjct: 7   RPSNKVAASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKK--SIDEVACN 64

Query: 230 QYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIII 409
           QY+   G P L + LS+ YSP   R ++   EI+VT+GA E  +S     ++ GDEVI++
Sbjct: 65  QYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTAGANEGFFSVFAAFLNPGDEVIVM 124

Query: 410 EPYFXCYDFMVKCAGGVPXFIALKPKPQGD--DISSADWVLDEAELASLFNNRTKMIIVN 583
           EP+F  Y   +   GGVP ++ + P  +G    +S+  W LD  +L +    +TKMI++N
Sbjct: 125 EPFFDQYISNITMNGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVIN 184

Query: 584 TPHNPLGKVFTQRELELIADL 646
           TPHNPLGK+F++ EL  IADL
Sbjct: 185 TPHNPLGKIFSEEELNEIADL 205


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 317 FNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFXCYDFMVKCAGGVPXFI-ALKPKP 490
           F ++   S    A Y  +L H D  + +I+I+P    + F  +  GGVP  + A+  KP
Sbjct: 583 FLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSF--EHPGGVPVLLDAVSVKP 639


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 161 YHAPKHVTEALSQIATSENP-LLHQYTRGFGLPRLVENLSKVYSPLIGRQ 307
           Y  P  +T+ L  I +SEN  L+HQ  R  GLP+ +E    +Y+P   RQ
Sbjct: 604 YWDPFMITD-LKFIGSSENAELIHQRLRN-GLPKSIEKGPFIYNPFNRRQ 651


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 485 KPQGDDISSADWVLDEAELASLFNNRTKMIIVNTPHNPLGKVFTQRE 625
           KP  DD+   D +LD+ ++ S F N  K  I    H   G    + E
Sbjct: 21  KPNFDDLDDLDDILDDLDVPSAFKNEEKKNI--DEHKQTGNTSKENE 65


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 221 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTS 340
           LL    RG G  R  E+L K   PL+   ++AFN +L+++
Sbjct: 720 LLRALFRGIGGGRF-ESLYKEVMPLLHALLEAFNSLLISA 758


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 500 DISSADWVLDEAELASLFNNRTKMIIVNTPH 592
           DI +++W+      +SL  NRT +++ +  H
Sbjct: 771 DIHTSNWIYKHCFQSSLMENRTVILVTHNVH 801


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 257 RLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 397
           R++ N++K +   I   +D FNE+       + L +   GHVD  DE
Sbjct: 74  RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDE 120


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 194 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEIL 331
           S + T  N L    T  FG   L   +  V + L+ R+I+ F E+L
Sbjct: 460 STLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEEVL 505


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 581 NTPHNPLGKVFTQREL 628
           N  H P GK FTQREL
Sbjct: 54  NPIHEPNGKKFTQREL 69


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 260 LVENLSKVYSPL--IGRQIDAFNEILVTSGAYEALYSTILGHVDTG--DEVIIIEPYFXC 427
           ++E + K  S L  + ++ID   + L    A++ LYS +L  V  G  D + ++E    C
Sbjct: 536 VIEIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYAGDTDSIDVLEDIDNC 595

Query: 428 Y 430
           Y
Sbjct: 596 Y 596


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 86  FSHQLHNVPAIETFLPLYD 30
           + H LH V A E F P YD
Sbjct: 254 YYHNLHRVGAFEPFDPYYD 272


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 191  LSQIATSEN--PLLHQYTRGFGLPRLV-ENLSKVYSPLIGRQ 307
            L QI ++ +  PLLH Y    GL +++ EN + V+  L+ +Q
Sbjct: 1220 LDQIISTNSIAPLLHSYLADIGLYQMIFENFAYVHPWLLRQQ 1261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,800
Number of Sequences: 5004
Number of extensions: 54771
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)