Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31898
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 57 2e-09
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 48 1e-06
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 46 7e-06
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 33 0.029
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 32 0.087
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 29 0.81
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 1.9
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 1.9
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 27 3.3
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 5.7
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 7.6
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 7.6
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 25 7.6
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 7.6
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 10.0
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 25 10.0
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 57.2 bits (132), Expect = 2e-09
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Frame = +3
Query: 144 FRSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDFGALW-K 320
F D+D+ G I+++EL + + +P E ++ MI D G I F +F + +
Sbjct: 18 FSLFDRDQDGNITSNELGVVMRSLGQSPTAAE-LQDMINEVDADGNGTIDFTEFLTMMAR 76
Query: 321 YVSDWQN------CFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRG 482
+ D N F+ FD+D +G I EL + LT+ G RLS + V M+++ D G G
Sbjct: 77 KMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDG 136
Query: 483 TILFDDF 503
I +++F
Sbjct: 137 VINYEEF 143
Score = 42.7 bits (96), Expect = 5e-05
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +3
Query: 324 VSDWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILFDDF 503
+++++ F FDRD GNI EL + + G + + M+ + D G GTI F +F
Sbjct: 11 IAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEF 70
Query: 504 IQCCVTLYTLT-------SAFRQYDSDQDGVITI 584
+ T AF+ +D D +G IT+
Sbjct: 71 LTMMARKMKDTDNEEEVREAFKVFDKDGNGYITV 104
Score = 35.1 bits (77), Expect = 0.009
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Frame = +3
Query: 246 RLMIGMFDKQNRGVISFEDFGALWKYV------SDWQNCFRSFDRDNSGNIDRVELKNAL 407
R +FD+ G I+ + G + + + ++ Q+ D D +G ID E L
Sbjct: 15 REAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEF---L 71
Query: 408 TAFGYRLSD----DVVGIMVQKFDRFGRGTILFDDFIQCCVTL------YTLTSAFRQYD 557
T ++ D + V + FD+ G G I ++ +L + R+ D
Sbjct: 72 TMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREAD 131
Query: 558 SDQDGVITIHYEQFLKMV 611
+D DGVI +YE+F +++
Sbjct: 132 TDGDGVI--NYEEFSRVI 147
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +3
Query: 330 DWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILFDDFIQ 509
++ FR FD+DNSG I+ + + + G +LSD+ V +MVQ+ D G+ + DF+Q
Sbjct: 79 EYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 144 FRSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDF 305
FR DKD SGYI + + + V+LM+ D N G + DF
Sbjct: 84 FRVFDKDNSGYIETAKFADYMKT-LGEKLSDNEVQLMVQEADPTNSGSFDYYDF 136
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 45.6 bits (103), Expect = 7e-06
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +3
Query: 330 DWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILFDDFIQ 509
D F+ FD D ID EL+ A+ A G+ V +++ FD+ G+G + +DF++
Sbjct: 38 DINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVR 97
Query: 510 CCV-------TLYTLTSAFRQYDSDQDGVITI 584
L + AF +D D+ G I++
Sbjct: 98 VMTEKIVERDPLEEIKRAFELFDDDETGKISL 129
Score = 43.2 bits (97), Expect = 4e-05
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Frame = +3
Query: 144 FRSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDFGALW-- 317
F+ D D+ I EL+ A+ +N E ++++ FDK +G + EDF +
Sbjct: 43 FKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD-FDKTGKGYLQMEDFVRVMTE 101
Query: 318 KYVS-----DWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRG 482
K V + + F FD D +G I L+ + D + M+++FD G
Sbjct: 102 KIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDG 161
Query: 483 TILFDDFI 506
I +FI
Sbjct: 162 EINEQEFI 169
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 33.5 bits (73), Expect = 0.029
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 102 FQSPMPSRDFLWNIFRSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNR 281
F P ++++N+F D D++GYI E ALS + N + + ++D N
Sbjct: 58 FGDPSAFAEYVFNVF---DADKNGYIDFKEFICALSVTSRGELNDKLI-WAFQLYDLDNN 113
Query: 282 GVISFED 302
G+IS+++
Sbjct: 114 GLISYDE 120
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 31.9 bits (69), Expect = 0.087
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 324 VSDWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFD 467
+ + + F D+D GNI R ++K LT+ S+D + M + +
Sbjct: 47 IQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESIN 94
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 28.7 bits (61), Expect = 0.81
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Frame = +3
Query: 345 FRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILFDDFIQCCVTL 524
F D + SG+IDR E + + L+ + ++ D G G + F +FI
Sbjct: 30 FIKIDANQSGSIDRNEFLSIPSVASNPLASRLFSVV----DEDGGGDVDFQEFINSLSVF 85
Query: 525 YT-------LTSAFRQYDSDQDGVIT 581
L AF+ YD D+DG I+
Sbjct: 86 SVHGNKEEKLKFAFKIYDIDRDGYIS 111
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -3
Query: 499 SSNNIVPLPNLSNFCTIIPTTSSDNLYPKAVSAFFNSTLS 380
++ +VP +N + +PTT+ +++P + F+N+T +
Sbjct: 141 NTTTVVPPTTHANTTSFVPTTTESSIHP-ITTGFYNTTFT 179
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 144 FRSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDFGALWKY 323
F D GYI ++L+++ + N E ++LM+ + G +S E+F LW +
Sbjct: 18 FDLFDVTHKGYIDFEDLRRSCAQLGEN-LTKEQLQLMLDLAG--TNGKVSREEFAELWIH 74
Query: 324 VS 329
+S
Sbjct: 75 IS 76
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = -3
Query: 508 CMKSSNNIVPLPNLSNFCTIIPTTSSDNLYPKAVSAFFNSTLSIFPELSRSNDRKQFCQS 329
C +S N + ++ TIIP + A + T S+ + ++ D Q C
Sbjct: 246 CSESINTSA-VAKFTDIPTIIPIFLDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDE 304
Query: 328 ETYFQSA 308
TY + A
Sbjct: 305 STYIELA 311
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.7
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Frame = -3
Query: 481 PLPNLSNFCTIIPTTSSDNLYPKAV------SAFFNSTLSIFPELSRSNDRKQFCQSETY 320
P NF I T S NLY ++V ++ N T + E+ S D E
Sbjct: 362 PTGKRQNFINITVTDPSKNLYERSVKTAAELASLQNVTETTDNEIPNSPDFLDAASEEDE 421
Query: 319 FQSAPKSSNDMTPLFCLSNIPIIRRTVSGLNGFHVPLDRACCSSS 185
+ SS+ +TPL L N + + F PL + SSS
Sbjct: 422 HIPSLDSSSLLTPL-ALPNKKAFQPVKFRVPSFSSPLVKPASSSS 465
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -2
Query: 515 AALYEIIKQYCPSTESIKFLHHYTNNIIRQSVSKGCKCILQFHSI 381
A Y KQY E+ KFL H N ++ + ++ + + + ++
Sbjct: 174 AQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDNL 218
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 102 FQSPMPSRDFLWNIFRSVDKDRSGYI 179
+Q P+P RD W FR+ R ++
Sbjct: 299 WQKPLPDRDVPWPTFRATSIGRCPFV 324
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -2
Query: 488 YCPSTESIKFLHHYTNNIIRQSVSKGCKCILQFHSIYIPRII---TVK*SETILPIRNIF 318
Y S++ I+ +H +I Q+ + GC + + IP +I K + I P++N+F
Sbjct: 155 YAQSSQ-IRAIHQKMFQVI-QNQANGCS-MKELVQKLIPEVIGRAIEKATNNIYPLQNVF 211
Query: 317 PKCTKVLK 294
+ K+LK
Sbjct: 212 VRKVKILK 219
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 287 DTPILFVKHTNHQTYSF 237
D PILF+KH N+ T F
Sbjct: 216 DLPILFIKHPNNGTSFF 232
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 262 IPIIRRTVSGLNGFHVPLDRACCSSSADM*PLLSLSTLLKM 140
IPI+RR + N P ++ S+SA+ PL+ + L KM
Sbjct: 274 IPILRRQAASANAISTPWNQV-NSNSANDGPLIVSAVLHKM 313
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 611 NHFKELLIMYRDDAILVRVVLAEC*CKSIKC--DAALYEIIKQYCP 480
N K L+I D +L VV EC ++I C D + ++ KQY P
Sbjct: 88 NPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQYLP 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,111
Number of Sequences: 5004
Number of extensions: 68102
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -