Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31898
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.22 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.87 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 345 FRSFDRDNSGNIDRVELKN-ALTAFGYRLSDDV-VGIMVQKFDRFGRGTILFDDFIQCCV 518
           F  +DR+N+GN++R EL+  A       L     +G M+   D  G G +  ++F     
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFS 301

Query: 519 TLYTLT 536
            LY+++
Sbjct: 302 KLYSVS 307


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 294 MI*HPYFVCQTYQSSDVQFQD*---MDSMFHWTEPVAVHQQICNHFYLCQH 151
           M+ HP+   +   S D Q +D     D   +   P ++H  IC++ ++C+H
Sbjct: 333 MLSHPFGTPRIMSSFDFQSKDQGPPNDGNGNILSP-SIHDNICSNGWICEH 382


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 498 HQTILSLYRIYQISAPLYQ 442
           ++ +++LY+ YQ S P+YQ
Sbjct: 438 YKKVMNLYQQYQQSLPVYQ 456


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 438 HHQTICIQRL*VHSSIPLYLYSQNYHGQMIGNNFANQKHISKVHQSPQMI 289
           H++   +  L V  S+ L   + NY   +  N F ++ ++++V     MI
Sbjct: 604 HNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 315 WKYVSDWQNCFRSFD 359
           W + +DW + +RS D
Sbjct: 112 WLFTTDWCDVWRSLD 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,810
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)