Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31896
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0681 - 26685995-26686073,26686174-26686301,26686368-266864... 71 7e-13
01_01_0291 + 2385464-2385515,2386010-2386071,2386177-2386320,238... 70 2e-12
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 32 0.39
02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117 31 0.90
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 30 2.1
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 29 3.6
03_02_0724 - 10718756-10718931,10719008-10719233,10719330-107194... 29 3.6
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 29 4.8
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 28 6.4
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686... 28 6.4
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270 28 8.4
>03_05_0681 -
26685995-26686073,26686174-26686301,26686368-26686454,
26686532-26686586,26686715-26686788,26687024-26687167,
26687267-26687328,26689018-26689141
Length = 250
Score = 71.3 bits (167), Expect = 7e-13
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Frame = +2
Query: 287 ANSKQPGVTK-SLLYNGSKFQGHQK----SKGNSYEVEVVLQHVDEENSYLCGYLKIKGX 451
AN+ P SLL G + G Q K +++V V + D E YLCG ++
Sbjct: 45 ANAGHPSPPSCSLLSAGRCYAGTQNVSNIQKEEAWKVNVRIHGCDLEQGYLCGTMEALNV 104
Query: 452 XXXXXXXXXXXDGEIISSK-YPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYE 628
+GEI+ +K Y F T KW+A + D +HWSKF F P L +D
Sbjct: 105 PLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWSKFPSFTPLLSQIETDGGKSV 164
Query: 629 SLAKADYVFM--------RWKEHFLV 682
L+ Y+FM RWKE + V
Sbjct: 165 DLSNYAYIFMVLHHLTFHRWKEQYFV 190
>01_01_0291 +
2385464-2385515,2386010-2386071,2386177-2386320,
2386496-2386569,2386698-2386752,2386830-2386916,
2386983-2387110,2387211-2387289
Length = 226
Score = 70.1 bits (164), Expect = 2e-12
Identities = 46/146 (31%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Frame = +2
Query: 287 ANSKQPGVTK-SLLYNGSKFQGHQK----SKGNSYEVEVVLQHVDEENSYLCGYLKIKGX 451
AN+ P SLL G + G Q K +++V V + D E YLCG ++
Sbjct: 21 ANAGHPSPPSCSLLSAGRCYAGTQNVSTIQKEEAWKVNVRINDCDLEQGYLCGTMEAVNV 80
Query: 452 XXXXXXXXXXXDGEIISSK-YPFLTRKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYE 628
+GEI+ +K Y F T KW+A + D +HWSKF F P L +D
Sbjct: 81 PLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWSKFPSFTPLLSQIETDGGKSV 140
Query: 629 SLAKADYVFM--------RWKEHFLV 682
+ Y+FM RWKE + V
Sbjct: 141 DFSNYAYIFMVLHHLTFHRWKEQYFV 166
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 699 LLYDPGTKKCSFHLINT*SAFARDS*SNESELKVFKYGTNKSNLLQCF 556
L DPGT C F+L+ S F D+ N + K K T+K CF
Sbjct: 452 LRQDPGTSTCGFYLMRFMSIFMEDNNWNIMDAKKLKLPTSKLLPHACF 499
>02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117
Length = 386
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 269 ITPPPPANSKQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEENSYLCGYL 436
+ PP NS +PGV ++L+ NG +G G + V + VD E+S L G++
Sbjct: 189 LNPPRRTNSVRPGVAENLVKNGDFEEGPYIIPGTRWGVLIPSMVVD-EHSPLPGWM 243
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 158 SVTTVCHGTYSSLSSATVTFTRARSSSYGKIMPVKVDITPPPP 286
S +T TYS SS TVT R R K+ P I PPPP
Sbjct: 239 SSSTSTSPTYSCSSSDTVTTPRNRKPELSKLPP----IPPPPP 277
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 524 RKWDADEDVDRKHWSKFDLFVPYLKTFNSDSFDYESLAKADYVFMRWKEHFLVPGSYNKR 703
++W E +D KHWS+F L N D F+Y+ + W LV ++ R
Sbjct: 446 KQWSQSELIDIKHWSQFQ---RELSLKNIDMFEYKQSR-----VLHWVASLLVTSGFHAR 497
>03_02_0724 -
10718756-10718931,10719008-10719233,10719330-10719400,
10719496-10719583
Length = 186
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 153 FQFYLNFSLIDRTYVLHDGCTITIKR*KQICWGSFTSL 40
F+F+ S+ D Y L GC+ TIKR G F L
Sbjct: 103 FRFFNGASVEDARYALRRGCSHTIKRAGSFRAGDFNDL 140
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 98 VVRLQ*KGKNRYAGDLSHHLDLVKVRKQTPQI 3
V+ Q KG+N + G SHHLD+ ++ P I
Sbjct: 326 VINKQLKGRNAWNGARSHHLDVQQLPSGKPWI 357
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 358 FLMSLKFRAVVKEGFCHTRLF*ISWWRWCNV 266
FL+S+ +AV + HTRL I+ WR C++
Sbjct: 254 FLLSIVIKAVWRAKALHTRLNAIAVWRRCHM 284
>04_01_0522 -
6865049-6865131,6865214-6865388,6865692-6865877,
6866489-6866599,6866678-6866890,6867446-6867553,
6867632-6867773,6867855-6868951,6871287-6871559
Length = 795
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +2
Query: 296 KQPGVTKSLLYNGSKFQGHQKSKGNSYEVEVVLQHVDEE 412
++ G+ + ++ +G FQG K + +Y V+ +LQ D++
Sbjct: 694 EREGLIREIVSSGQTFQGLMKDQFGNYVVQRILQTCDDK 732
>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
Length = 248
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 197 SSATVTFTRARSSSYGKIMPVKVDITPPPP 286
S +T RARSS+ +I+P PPPP
Sbjct: 31 SDSTTGRLRARSSAVAQIIPPPAFAIPPPP 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,343
Number of Sequences: 37544
Number of extensions: 309966
Number of successful extensions: 1069
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -