Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31894
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 194 1e-50
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.41
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.9
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.9
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.7
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.9
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.9
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 8.9
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 8.9
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 8.9
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 8.9
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 8.9
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 8.9
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 8.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 194 bits (473), Expect = 1e-50
Identities = 100/212 (47%), Positives = 123/212 (58%)
Frame = +3
Query: 6 NKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPG 185
N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++
Sbjct: 103 NVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKD 162
Query: 186 DKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAA 365
KVG SEATLLNMLNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A
Sbjct: 163 AKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITA 222
Query: 366 LSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSKFXXXXXXXXX 545
+SL YPTI S HS+ N +KNL+ K F+ DPS F
Sbjct: 223 ISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPA 280
Query: 546 XXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 281 AAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.41
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -3
Query: 503 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 324
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 323 ILWFDVQNF 297
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 515 LRWVLNE-LLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSL 339
LR ++N L D G + +C+ +D ++++T + +++S KS + N
Sbjct: 1012 LRPLVNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYK 1071
Query: 338 ELGTEI 321
EL TE+
Sbjct: 1072 ELATEL 1077
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 157 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 32
+IS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 64 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 162
PPTT + + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 40 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 153
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 1 WRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 156
+R++ R L+ P +S PP TPA+ + + ++P+ R++L++
Sbjct: 81 FRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 164 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 42
IVD NS + R + L ++G L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 612 DDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 612 DDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 612 DDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 612 DDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 612 DDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 612 DDDMGFGLFD 641
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,733
Number of Sequences: 5004
Number of extensions: 54693
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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