Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31889
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.21 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 301
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 419 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 529
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 484 LLIRRNSFFVLDLRLHILNC 425
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 430 NCVGCFYFQSDGLSGQSFYEDLHAS 356
           N + CF+  +D    + FYE +  S
Sbjct: 560 NSLDCFFTMNDLEPSEIFYEKIETS 584


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 430 NCVGCFYFQSDGLSGQSFYEDLHAS 356
           N + CF+  +D    + FYE +  S
Sbjct: 560 NSLDCFFTMNDLEPSEIFYEKIETS 584


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 640 LPKVMVFPSQSFHEDLHASTKTQYKMEC 557
           LP +  FP++  HE  +A    Q   +C
Sbjct: 450 LPVLKNFPTRYIHEPWNAPLNVQRAAKC 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,754
Number of Sequences: 438
Number of extensions: 4443
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)