Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31888
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 33 0.025
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 28 1.3
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.7
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 27 1.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.7
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 3.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 3.8
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 5.1
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 6.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 6.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.9
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 25 8.9
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 8.9
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 33.5 bits (73), Expect = 0.025
Identities = 25/85 (29%), Positives = 37/85 (43%)
Frame = +2
Query: 62 KRTRLVSINSWTGYYNWTRKKRGQLRATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKT 241
KRT L +I+ W G Y +KKR S L+S K E S + K PL + R
Sbjct: 74 KRTILNNIDDWRGLYGKLKKKRNAHYNVASAKLRSAYTKLEQ-SKQNKRIVPLEREPRAA 132
Query: 242 ITAEKNTKINNKIDSSIIENRMLSE 316
++ ++N S + R S+
Sbjct: 133 RPPKRPRPMSNYCPKSSLMARAKSD 157
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 122 KRGQLRATQSL-PLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINNKIDSSIIE 298
+ G+L + + P+Q L K + S+E+ + P HK + + KI D IE
Sbjct: 139 EEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAER--KRSPSPKIEILEDDEEIE 196
Query: 299 NRMLSEDKRRYPQGG 343
+ +D+ P G
Sbjct: 197 DVASDKDEEEKPWSG 211
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = -2
Query: 260 YFSLQLSFFYLCGLEAVMFSLQLIY------FRVSSLNFVMARTV*LLIVLVFS 117
+ + + FFY+CG+ ++F + +Y + SS + +V L++L+F+
Sbjct: 227 FLMMTVQFFYVCGIPYILFKIIRMYTSTQKEYYASSKQMITTFSVITLLLLLFT 280
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 22 TKAELYKLQETCSETYKTCIDKQLDRILQLDA 117
TK +K +TC+ Y+TCI + + + QLD+
Sbjct: 96 TKKVFFKFLKTCAIFYQTCISELISK-FQLDS 126
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +2
Query: 74 LVSINSWTGYYNWTRKKRGQLRATQSLPLQSLEKKRENISIEEKTS-----PPLNHKDRK 238
L NS + T++K ++ + + LEK R+N + E TS P +RK
Sbjct: 1445 LEEFNSTKEELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKDTEIPNEEEMERK 1504
Query: 239 TITAEKNTKINNKIDSSIIENRMLSEDKR 325
+ ++ ++ ++I + +N +L + +
Sbjct: 1505 KVMQQEVLRLRSRIAKELQKNELLRKQNQ 1533
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 1.7
Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Frame = +2
Query: 137 RATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINNKIDSSIIENRMLSE 316
R + LP S +++ + S+ + P + ++ T + K+DS+I+
Sbjct: 210 RTSAYLPGSSTDEQEKRSSVTLASMPSSHSSTASLLSPLDTTSFSTKLDSTILALETDES 269
Query: 317 DKRRYPQGGVTLPNKITP-EDLANEMLWLRMDQNYIMAENKKRERELQDLVDKMTSSSED 493
R +LP+ TP + L+ E L M + + KR ++ +L+ ++ ++
Sbjct: 270 LSRTISYATTSLPS--TPGKRLSKES--LAMSEASSINPEYKRIKKRANLIKELVTTEAA 325
Query: 494 YLRQI 508
YL +
Sbjct: 326 YLNDL 330
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 179 VSSLNFVMARTV*LLIVLVFSASNCNIRSSCLSIQVLYVSEQVS*SLYNSAFVN 18
+ + N+ M +V+V S ++C+I S+ +S Y + SL +S F N
Sbjct: 316 IGTNNYFMTDVKSSSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTN 369
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 539 YCPTRLSSSYLFVEDNLHCCL 477
YC T +S+++ +++ L+CCL
Sbjct: 327 YCRTEISAAWYYMKLGLNCCL 347
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 410 QNYIMAENKKRERELQDLVDKMTSSSEDYLRQI 508
+NYI++ N+KR+++ D ++S D + +I
Sbjct: 229 RNYIVSLNQKRKKDEADAESVLSSDDNDSIEEI 261
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 398 LRMDQNYIMAENKKRERELQDLVDKMTSSSEDYLR 502
LR DQ+ ++ EN+ ER+L ++ +++ + R
Sbjct: 1844 LRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSAR 1878
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 25 KAELYKLQETCSETYKTCIDKQLDRILQLDA 117
K +L K E+C Y+ CI+ + I L++
Sbjct: 194 KKQLNKASESCKGNYQACIESRSTLITSLES 224
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/60 (16%), Positives = 27/60 (45%)
Frame = +2
Query: 110 WTRKKRGQLRATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINNKIDSS 289
W + K + Q + ++ +S+ P NH + ++T+ +++ NN ++ +
Sbjct: 388 WDKDKFSDIPVLQHISMKPSNASNHTVSLGYLNDRP-NHSKKNSVTSTSSSQFNNFLEQN 446
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 107 NWTRKKRGQLRATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINNKI 280
N + K+G+ + S E+ + +E S L+H D K+I + K N K+
Sbjct: 525 NNKKNKKGKHTQIEDPTAASKEELENLVREDENDSEQLDHFDMKSILKAEKFKKNRKL 582
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 6.7
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Frame = +2
Query: 131 QLRATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINN---KIDSSIIEN 301
++ ++PL L+ K + +++ +T + ++ AE K N+ K +S +++
Sbjct: 317 KIHLADTIPLVFLDLKPKEYTVDLETPKLVEELTKQLHVAESTLKENSEKFKQNSESLKS 376
Query: 302 RMLSEDKRRYPQGGVTLPNKITPEDLANEMLWLRMDQNYIMAENKKRERELQD 460
R+ ++ Y L N+I ++ +LW I EN+K ++L D
Sbjct: 377 RV--DNLNDYI---TKLQNEI--DECRRNLLWAESSCETIREENQKNIKKLND 422
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 398 LRMDQNYIMAENKKRERELQDLVDKMTSSSEDYLR 502
LR + ++ +E REL++L TS+ ED+++
Sbjct: 373 LRKENLFLQSERTHLLRELEELRHLATSAKEDFVK 407
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 375 SSGVILFGNVTPPCGYLLLSSDNILFSMI 289
SS ++LF N G L+L +LFSM+
Sbjct: 179 SSSLVLFDNAHVTEGRLILLDATLLFSMV 207
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 8.9
Identities = 16/69 (23%), Positives = 38/69 (55%)
Frame = +2
Query: 302 RMLSEDKRRYPQGGVTLPNKITPEDLANEMLWLRMDQNYIMAENKKRERELQDLVDKMTS 481
+ LSE KRR+P+ G+TL + + ++ E ++++ + + E++ L + ++
Sbjct: 835 KALSEVKRRFPE-GITLLDPVENMNI-KEPTFIKLMKKVNILESRLLSNPLHNF-SELEE 891
Query: 482 SSEDYLRQI 508
+YLR++
Sbjct: 892 KYAEYLRKL 900
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 25.0 bits (52), Expect = 8.9
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +2
Query: 110 WTRKKRGQLRATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNTKINNKIDSS 289
W + K+ SL L E+ I+EK N+ K + NTK NK D S
Sbjct: 77 WKKLKQLIHEVDDSLGLVDSGSDSED-EIKEKAE---NNASLKNDEDDLNTKTENKTDDS 132
Query: 290 IIEN 301
+EN
Sbjct: 133 SVEN 136
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/50 (22%), Positives = 30/50 (60%)
Frame = +2
Query: 113 TRKKRGQLRATQSLPLQSLEKKRENISIEEKTSPPLNHKDRKTITAEKNT 262
T+KK + + + L+ ++KK + ++ +TSP ++K+ + + A+ ++
Sbjct: 24 TKKKATGQQTSNTKNLRDVKKKGKQLAYVPRTSPRKSYKNGEYVLAKMSS 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,724
Number of Sequences: 5004
Number of extensions: 49186
Number of successful extensions: 205
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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