Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31887
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 116 ISCTVCWTLGILVIPPTSRTSPM 48
           +S TV + L   +IPPTS T P+
Sbjct: 276 LSLTVFFLLLAEIIPPTSLTVPL 298


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 452 PRGAGGMPTS 423
           PRG GG+PTS
Sbjct: 399 PRGPGGVPTS 408


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 116 ISCTVCWTLGILVIPPTSRTSPM 48
           IS  V + L + +IPPTS   P+
Sbjct: 284 ISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 116 ISCTVCWTLGILVIPPTSRTSPM 48
           IS  V + L + +IPPTS   P+
Sbjct: 284 ISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 116 ISCTVCWTLGILVIPPTSRTSPM 48
           +S TV + L   +IPPTS   P+
Sbjct: 280 LSLTVFFLLLAEIIPPTSLVVPL 302


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 116 ISCTVCWTLGILVIPPTSRTSPM 48
           +S TV + L   +IPPTS   P+
Sbjct: 289 LSLTVFFLLLAEIIPPTSLAIPL 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,850
Number of Sequences: 438
Number of extensions: 2181
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)