Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31880
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   191   4e-49
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    29   4.4  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  191 bits (466), Expect = 4e-49
 Identities = 100/198 (50%), Positives = 130/198 (65%), Gaps = 1/198 (0%)
 Frame = +3

Query: 12  KVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIAR 191
           KV G+LGQVL+ P+ L+DEESI KAV+YSNVVINL+G    T  + Y DV+  G RR+AR
Sbjct: 101 KVLGELGQVLYFPFELMDEESIRKAVKYSNVVINLIGTRVPTGKYNYYDVNDTGARRLAR 160

Query: 192 ICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATIIRASDIY 371
           IC+E GVE+F+HLS L A   P+       S +  SK LGE AVREE+P ATIIR S IY
Sbjct: 161 ICKEMGVEKFVHLSALGATTQPQKGHFVAKSQFLHSKGLGEVAVREEFPEATIIRPSVIY 220

Query: 372 GSEDRFLRSLVNKMR-SHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQ 548
           G  D F++  V++ R +  + + LYK G  T K P++V DVA GI +A  D   K   Y+
Sbjct: 221 GELDGFIQYYVSRWRKTPLDYVYLYKKGEETYKMPIWVGDVAAGIQSAVNDPTAKGHTYE 280

Query: 549 AVGPKRYLLADLVDWFYK 602
            VGP  Y L++L+D+ YK
Sbjct: 281 FVGPHCYQLSELIDFMYK 298


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 678  LSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVLAQRLGRLHI*C 526
            L G  S    CR+    P     + +C TN P R  +  + ++LGR    C
Sbjct: 1763 LPGVKSTTCLCRTGFAGPQCEEITDICSTNNPCRNGARCIGEKLGRFKCQC 1813


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,507,993
Number of Sequences: 27780
Number of extensions: 344925
Number of successful extensions: 874
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)