Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31876
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 32 0.065
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 31 0.15
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 1.8
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.2
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 4.2
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 25 7.4
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 25 9.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.8
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 32.3 bits (70), Expect = 0.065
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +2
Query: 380 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG---WLNSII 550
A+ G+GR+ + L V G S+ + + S IL +G +L
Sbjct: 68 AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127
Query: 551 FIGMMVGAYAWGSVADSLGRKRVLIAIFI-VNALAIVA 661
+G++VGA W AD++GR+ F+ A++A
Sbjct: 128 NLGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIA 165
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 31.1 bits (67), Expect = 0.15
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Frame = +2
Query: 290 TAELGVVPSVKKSKSDPEK----GSNSEKADFERAIELTGYGRF-----HYMLLAVCGLV 442
+ E + SV + +SD EK S + + E ++ G R H++ +AV G+
Sbjct: 26 SVEEPIEASVTRYRSDEEKLDDKSSGAHVTEKEAEFDIEGGSRETSQWKHFLNVAVAGVA 85
Query: 443 STSEEMDVISMSFILPSAQ-CDLDLTTQTKGW--LNSIIFIGMMVGAYAWGSVADSLGRK 613
S+ S+ ++ + + TT K + I ++G +VG ++G +D GRK
Sbjct: 86 LMSDGYCSNSIGTVITILRKLYPEETTHNKSLQDIGMIAYVGTIVGQLSFGWYSDRFGRK 145
Query: 614 RVLIAIFIV 640
+I I+
Sbjct: 146 NGMITATII 154
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 372 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 241
KS S + SG+D F + ++ ++++L GP SP S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +2
Query: 263 LQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLV 442
L +N G +P++ S S +++ R + +T + R Y+ + + ++
Sbjct: 1302 LDVNNQRHTLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVL 1361
Query: 443 STSE-EMDVISMSFILPSAQCDLDLTTQTKGWL 538
S+ + + S + ++ S C+ L TKGWL
Sbjct: 1362 SSDQLPLQCGSATSVVVSEGCNWALIGTTKGWL 1394
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 254 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLL 81
LH + ED+ + G FL S A R+C + + + + L + + P+ + L+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPIASSNTNGLI 182
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 245 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 394
CD L+ GSK+ K++ P K +N+E D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 61 SGGTLTNNKEEAHRIVTGKLYAVGSATPPSERRLSVPA-TTIQS 189
+GGT+TN E + +T L A S T P + +P +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 222 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNSV*LAGDDP 100
GS+S A L+GG ++TG S +N+ D P
Sbjct: 148 GSLSRPFAPPAGLFGGGNKPAAAVTGTSSNSNNASAKSDGP 188
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 231 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 133
+ PGS +L G A L G G +S+ G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,797
Number of Sequences: 5004
Number of extensions: 61672
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -