Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31873
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    28   1.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.9  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   3.9  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    26   6.9  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 311 KL*SFFKPWQRVSQKEKTNLIKFQVKKKLFKYDEELLRTILNRFSQTIL 165
           K+ SF    +RV   +K +  K Q+  +L  YD+ELL  +   F  T++
Sbjct: 582 KITSFVASAERVGAAKKISNNKAQLALELIGYDDELLPAMQYVFGSTLV 630


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 1   FKLCKRISSFVFLFELHLKLHSIFDRNSFH 90
           F +  R S   F  +L+  LHSI DRN+ H
Sbjct: 227 FSIFYRSSYKKFKQDLYFNLHSICDRNTVH 256


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 466 HSQAYF*KFYLNFTGVIMLALCFRGNTALHPHF 368
           H QAY      NFTG+I L+  FRG      HF
Sbjct: 353 HKQAYAVIRQSNFTGLISLSDGFRGPGNWEDHF 385


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
 Frame = +3

Query: 633 NTNYRPMSESRRNIKNF---FKVDDGEDTESQPVPT------NSY--DGTPNXEKK 767
           N NYRP  ES  N+  F     + DG  ++S+   T      NSY  DG  N  ++
Sbjct: 663 NKNYRPQLESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEFDGASNNNQR 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,031
Number of Sequences: 5004
Number of extensions: 56832
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)