Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31873
         (775 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel...    31   6.1  
L15297-1|AAA65619.1|  623|Homo sapiens cyclic nucleotide-gated c...    31   6.1  
L15296-1|AAA65620.1|  909|Homo sapiens cyclic nucleotide-gated c...    31   6.1  
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c...    31   6.1  

>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel beta
            subunit protein.
          Length = 1251

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 528  KLLSNVMFRRVNFYSICFAFGLSV--LLILAGSRYTDNTNYRPMSESRRNIKNFFKV 692
            K L  ++F+ +N+++  FAF + +  +  + G+     T YR   +S     NF+K+
Sbjct: 853  KTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKI 909


>L15297-1|AAA65619.1|  623|Homo sapiens cyclic nucleotide-gated
           cation channel protein.
          Length = 623

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 528 KLLSNVMFRRVNFYSICFAFGLSV--LLILAGSRYTDNTNYRPMSESRRNIKNFFKV 692
           K L  ++F+ +N+++  FAF + +  +  + G+     T YR   +S     NF+K+
Sbjct: 225 KTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKI 281


>L15296-1|AAA65620.1|  909|Homo sapiens cyclic nucleotide-gated
           cation channel protein.
          Length = 909

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 528 KLLSNVMFRRVNFYSICFAFGLSV--LLILAGSRYTDNTNYRPMSESRRNIKNFFKV 692
           K L  ++F+ +N+++  FAF + +  +  + G+     T YR   +S     NF+K+
Sbjct: 511 KTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKI 567


>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
            CNG-channel beta subunit protein.
          Length = 1245

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 528  KLLSNVMFRRVNFYSICFAFGLSV--LLILAGSRYTDNTNYRPMSESRRNIKNFFKV 692
            K L  ++F+ +N+++  FAF + +  +  + G+     T YR   +S     NF+K+
Sbjct: 847  KTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKI 903


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,727,368
Number of Sequences: 237096
Number of extensions: 1681911
Number of successful extensions: 3421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3421
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)