Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31870
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    28   1.5  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   3.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.7  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   4.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   6.1  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    25   8.1  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = -3

Query: 554 KKRIDAVEMWCWRRMLQISWTEFRTNQSILQELCIKQRLSSIVQ 423
           K + DAVE+  W+  L+ +  +F++   +   +C+++ +S+ VQ
Sbjct: 487 KIQFDAVEILLWKTALRFNLPDFQSADDLF--VCVEKSVSNFVQ 528


>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
 Frame = -3

Query: 608 VFPIFLYAAETWTLRENEKKRIDAVEMWC--WRRMLQISWTEFRTNQSILQELCIKQRLS 435
           +  +FLY   T   R+NEK  I + E     WR        E+  +++ L  L IK  + 
Sbjct: 9   IVTLFLYLLITRWRRKNEKSFIASEEPKQPEWRDYTPAELKEYNGSKNSLVFLAIKGTVY 68

Query: 434 SIV--------QGPILTFFGHVSRRG 381
           ++         QGP   F GH + RG
Sbjct: 69  NVTMGSKFYGPQGPYSAFAGHDASRG 94


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 183 PLCQECIRLRREDGNFQFGTKSQSLFSSTFITKKTWMR 70
           P  Q C+R   ED   Q+G  +  L    F +KK W R
Sbjct: 383 PFMQRCVRAWEEDLTPQYGNLTTRLL---FASKKYWSR 417


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 293 IKAALNGPVDECTRRAAVREEWRRLVKRTTNRSDDHDHSAKSA-YD*EEKMVTSNLVPNL 117
           +K +  G   E T    +R     L KR+ N     D       YD  EK  TSN +P+L
Sbjct: 65  VKKSTAGITREYTEMIELRNHIITLSKRSVNMESRIDDMLNLLNYDLSEKRETSNEIPSL 124


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 162 VCTLGRVVVVITSVGGALHQTSPFL 236
           V  +GR+VV  T++GG L+Q S  L
Sbjct: 205 VVVVGRIVVESTNLGGRLNQNSILL 229


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 541  MLSKCGAGEECCKYRGRSSERISQFYRNS 455
            M S   +GEE  K    S ER SQF R+S
Sbjct: 972  MSSSVNSGEEVSKDNNVSQERGSQFLRSS 1000


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 91  NKCR*E**LRFGTKLEVTIFSSQSYALL--AEWSWSSLRLVVRFTRRRHSSR 240
           N C  +  L +     V + SSQ   L+  +EW WS  RL      R  SSR
Sbjct: 50  NSCSGKTELLYHLASNVLLRSSQELVLIVSSEWDWSIKRLTFILHERLISSR 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,388
Number of Sequences: 5004
Number of extensions: 63467
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)