Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31868
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    28   1.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   5.3  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 137 STQRKAQQCYFKGETHRLFPPALGEISHARSPSSANLYPGPGRSST 274
           S    AQ   +      + PP L E S ++SPS + L      SST
Sbjct: 375 SFDENAQVMRYSANAREILPPPLNENSGSQSPSHSLLQKSKNTSST 420


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 751 NARVIGSDGSVRTCLGRRR 695
           N+R +GS GS  T LGRRR
Sbjct: 3   NSRSVGSTGSNNTPLGRRR 21


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 91  AALTLGQWFRKWRIDIN-PAKSTAVLFQRGNSPLISSRIRRNITRPI 228
           A L   +W+ KW  D+N P     +  +   +P I      N+T+ I
Sbjct: 561 AGLDEQKWYEKWFHDLNIPLLRKCLTLRTDKNPFIEQPDEPNVTKKI 607


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 523 LAVGAPWFVRNMDLHDDLGLESIRK--HMKSMSE 618
           L V  PW+   M    D+  E IRK  H+K++ E
Sbjct: 81  LPVSLPWYPDGMAFMLDISKEVIRKSPHLKALQE 114


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 511 RFCRLAVGAPWFVRNMDLHDDLGLESIRKHMKSMSERYFDKAMR 642
           R+CR  + A W+   + L+  L L   R   +  +E   D   R
Sbjct: 326 RYCRTEISAAWYYMKLGLNCCLRLGLHRNITEGFTEEQIDSRRR 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,073
Number of Sequences: 5004
Number of extensions: 67152
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)