Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31868
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1724 - 39452858-39454309                                         31   0.79 
06_02_0109 - 11919279-11920109                                         29   5.5  
07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108     28   9.7  
06_03_1323 + 29313574-29314109,29314428-29315198,29315277-293153...    28   9.7  
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386...    28   9.7  

>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +3

Query: 213 YHTPDHPLRPIYTLGQEGQVPGSHPGCIHDIPPAYKNSPRPCRIY 347
           Y  P H   P+  L    QVPG HP CI     AY+  P PC  Y
Sbjct: 316 YFYPLHDTLPL-PLPLPQQVPGQHPPCI-----AYQMPPPPCLAY 354


>06_02_0109 - 11919279-11920109
          Length = 276

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 488 TPSNPYNPAFAG*PSGLRGS 547
           TPS P +PA AG  SGLRG+
Sbjct: 50  TPSTPPDPAMAGVLSGLRGA 69


>07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108
          Length = 380

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 222 PDHPLRPIYTLGQEGQVPGSHPGCIHDIPPAY 317
           P HP  P Y +   G +P +    IHDI   Y
Sbjct: 117 PRHPSAPSYVVAFRGTIPTNLGDLIHDIKIVY 148


>06_03_1323 +
           29313574-29314109,29314428-29315198,29315277-29315328,
           29318373-29318909
          Length = 631

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 132 RHQPSEKHSSVISKGKLTAYFLPH*EKYHTPDHPLRPIYTLGQEG 266
           R + SE       KGK TA  +P     HTPD P R +   G++G
Sbjct: 531 RRRGSEFSGLGPGKGKETAPGVPRQLLAHTPDSPARAMEEGGEDG 575


>03_02_0792 +
           11236785-11237337,11237711-11238261,11238446-11238628,
           11238768-11238966,11239055-11239761
          Length = 730

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 173 GETHRLFPPALGEISHARSPSSANLYPGPGRSSTWE 280
           GET RL PP   +IS + SPS   +     +   W+
Sbjct: 176 GETERLTPPGTFDISPSVSPSGKKVAVASYQGKKWD 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,899,742
Number of Sequences: 37544
Number of extensions: 500227
Number of successful extensions: 1275
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)