Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31866
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    44   2e-05
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    28   1.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    28   1.2  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
 Frame = -1

Query: 304 IFIHIIPQGTPYILIPFXXXXXXXXXXIRPGTLAVRLTANIIAGHLLITLL-----RRTG 140
           +F   +P GTP  LIP            R  +L +RL ANIIAGHL +++L        G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMG 208

Query: 139 TN-ISFYXXXXXXXXXXXXXXLESAVAIIQSYVITIL 32
            N I+F               LE  +A IQ+YV  IL
Sbjct: 209 LNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 387 LVVRARLVPNSARGLDLYYMDELKIQITY 301
           ++ R  LVP+S + + LYY D   I  TY
Sbjct: 818 ILYRGELVPHSYQSVPLYYSDHRPIYATY 846


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 415 HVLLKTFKMKTIYFVLLISVCAVSAIYLPDDSNSADLDKYKSESF 549
           H+  KT K    +  LL++   +   Y+PD+S SA+   +++  +
Sbjct: 233 HMYYKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPYHEAYEY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,701
Number of Sequences: 5004
Number of extensions: 33072
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)