Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31856
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.40
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 27 0.70
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 1.0
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 1.6
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 2.1
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 25 3.7
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 25 3.7
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 4.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 4.9
SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc... 24 6.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 24 6.5
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.5
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 8.6
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 24 8.6
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 24 8.6
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 0.40
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 49 KDRSSWRQTSAEDPDTGAPSHVSDIRGSGPGPVVRDLRLYEPR 177
K RSS + S+E + S V+ R GP+V +L +PR
Sbjct: 173 KARSSLPENSSEQVSSSFNSRVAHNRNFSDGPIVTNLETDQPR 215
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 27.5 bits (58), Expect = 0.70
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 8 GNLWVANFDGRQVLKIDPRGGKLLQKIPIPALQVTSVTF 124
G +A F G K+D GGK + + +P + + SV F
Sbjct: 380 GAALIAYFQGYYNRKLDANGGKPVPEARLPPMMIGSVLF 418
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 24.6 bits (51), Expect(2) = 1.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 74 LLQKIPIPALQVTSVTFGGPDLDQLYV 154
LL +P QV ++ + PDLDQ+YV
Sbjct: 460 LLSYLPSDGAQVETL-YSFPDLDQIYV 485
Score = 20.6 bits (41), Expect(2) = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 245 NVNVRLQ*CKKKNYKSNIDSHFL 313
N +V Q C + NY IDS F+
Sbjct: 494 NWDVVDQKCSEGNYSDIIDSSFI 516
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 1.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 223 SVQSKGRAAGRELFFAAVHRGGGHVQLVQVRTPE 122
S QSK E F A +H+ GG+ QL+ R E
Sbjct: 221 SEQSKKYNMFEEGFLAKLHKPGGNTQLIPERMKE 254
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 2.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 183 SSPRFIEAEVTYNWSRSGPPN-VTDVTWSAGIGIFCRSLPPRGSIFNTCR 37
S PRF EV Y W+R N +TD+T G R++ + CR
Sbjct: 1131 SQPRFGLMEVCYEWARGMSFNRITDLT-DVLEGSIVRTIIRLDEVLRECR 1179
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 140 DQLYVTSASMNRGEEQLPPCGSTFRLDGLEV 232
D LY+ S N G+E +P + FR G+E+
Sbjct: 13 DFLYLMSCFYNEGQEGIPDLAALFR--GVEI 41
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 95 PALQVTSVTFGGPDLDQLYVTSASMNRGEEQL 190
P + +V GG DL + VT A G+E L
Sbjct: 153 PIKSIVNVGIGGSDLGPVMVTEALKPYGQENL 184
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 4.9
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -1
Query: 367 HYLI*ISRLDLVCSKTVL*KMTIDIRFVVFFFTSLKTHVHIRMSFDLESVQSKGRAAGRE 188
HYL+ I + M+I I F +S + V+I L S S A +
Sbjct: 571 HYLVDIRECKKIMGYFSAYLMSIVIPFTGVTASSRRETVNI-----LSSSISVIECAVND 625
Query: 187 LFFAAVHRGGGHVQLV 140
+F+A VH G H++++
Sbjct: 626 VFYATVHALGDHLEII 641
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 4.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 47 LKIDPRGGKLLQKIPIPALQVTS 115
+ +DP+ GK L P+P ++ +S
Sbjct: 527 IPVDPKTGKALTNNPVPPVETSS 549
>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 121
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 101 LQVTSVTFGGPDLDQLYVTSASMNRGEEQLPPCGSTFRLDGLEVKGHPN 247
LQV + T P LDQL + +++ + + L G+T D L H N
Sbjct: 44 LQVETAT---PTLDQLNIMLSNIGKDKSDLLVAGATSIEDALTKYQHDN 89
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +2
Query: 50 KIDPRGGKLLQKIPIPALQVTSVTFGGPDLDQLYVTSASMNRGEEQLPP 196
++ P+ + P+P+ V ++ G PD S++ E ++PP
Sbjct: 430 QVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPP 478
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 6.5
Identities = 19/68 (27%), Positives = 26/68 (38%)
Frame = -2
Query: 219 SSLKVEPQGGSCSSPRFIEAEVTYNWSRSGPPNVTDVTWSAGIGIFCRSLPPRGSIFNTC 40
SSL P S S + +A S PN +W G + PP S +NT
Sbjct: 51 SSLNSRPVSSSGSGNAYSQAPYPPARPTSQRPN----SWQPGNASTMYASPPPSSNYNTA 106
Query: 39 RPSKLATQ 16
+P +Q
Sbjct: 107 KPPYQTSQ 114
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 356 MNISFRFSLLKNSFIKNDYRYSICSFFFYITEDARSH 246
+ +F +SL +SF+ + + S FY+ E +++H
Sbjct: 426 LTATFGYSLFSSSFLSHTKNPDVAS--FYVKERSKAH 460
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 237 PLTSSPSSLKVEPQGGSCSSP 175
P+T+SP LK+ C +P
Sbjct: 655 PITTSPQKLKLPRSSSPCKNP 675
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 86 SSAEVCRHEDRSLTPVVHQSWPPRGY 9
S+ E CR RS+ P ++ S RG+
Sbjct: 86 SAVEACRSNWRSIQPNINDSISSRGH 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,843
Number of Sequences: 5004
Number of extensions: 27391
Number of successful extensions: 74
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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