Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31856
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   8.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   8.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   8.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   8.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   8.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   8.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   8.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   8.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 131 PDLDQLYVTSAS-MNRGEEQLPPCGSTFRLDGLEVKGHPNVNVRLQ*CKKK 280
           P +D+  +   S +      + PC S +   G E +  PN  + +  C +K
Sbjct: 59  PSIDRSSIHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRK 109


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 141 SRSGPPNVTDVTWSAGIGIFCRSLPPRGSIFNT 43
           S   PP+   + ++  I  F +S PP  +++ +
Sbjct: 535 STETPPSYNQLNYNENIERFFKSKPPVATMYGS 567


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  WRQTSAEDPDTGAPSHVSDIR 126
           +RQ+ +ED +TG  S   + R
Sbjct: 15  FRQSRSEDSETGLRSRTQEER 35


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 89  PIPALQVTSVTFGGPDLDQL 148
           P  ALQ   V +G P   QL
Sbjct: 99  PSAALQPQHVVYGNPQQQQL 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,868
Number of Sequences: 438
Number of extensions: 2397
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)