Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31853
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 0.51
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 28 1.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.6
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 27 2.7
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 27 3.6
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 27 3.6
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 3.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.8
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 26 6.3
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 26 6.3
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 8.3
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 8.3
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 29.5 bits (63), Expect = 0.51
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 72 RVQRETVEARPQRGAVVTDPGHQEAGQEQSGSTELPEAETGPDNLARGRGQDRPGQEAED 251
+ Q V A +GA +E +E E E +T P + +++ G+EA++
Sbjct: 66 KTQEPIVSADDAKGAQGKGADEKEEKKETIQPPE--EVKTEPP-----QPEEKEGKEAKE 118
Query: 252 PEGPPQSAGREAEAQGE 302
PE PP+ E + GE
Sbjct: 119 PEEPPKEEAEEPQEGGE 135
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +1
Query: 145 RGKNKVAAQNCRKRKLD----QITSLADEVRTVRDRKLRTQRDHHSLLA-ERQRLKERFA 309
R KN+ QN + ++ + + E+ V + ++R+ RD ++ E+QR K+ +A
Sbjct: 278 REKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQSAMKKREKQRSKDEYA 337
Query: 310 ALYR 321
+LY+
Sbjct: 338 SLYK 341
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 1.6
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +1
Query: 7 EKRAKALGIPLEVQDIINLP-MDEFNERLSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRK 183
+K+ L DI + +DE R EAQ+S D ++R ++ V+ R
Sbjct: 1972 QKQISDLEASFAASDIERIKGIDECRNRDRTIRQLEAQISKFDDDKKRIQSSVSRLEERN 2031
Query: 184 RKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLK 297
+L L D + K +R H+L ER+R+K
Sbjct: 2032 AQLRN--QLEDVQASETQWKFALRRTEHALQEERERVK 2067
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -3
Query: 192 QFPLPAVLCCHF---VLAPPPDVPDQ*QLRLAEVVLRQSLVELVHGQINDVLDF 40
+FP+P VL C F +L P D+ Q QL +V+ S+V++ G IN V F
Sbjct: 283 KFPIPIVLLCFFLYSLLTPFFDIHLQFQL----IVMHMSIVQV--GFINSVKTF 330
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 100 DLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEV 222
D + ++L+ + + +N+ AAQ CR +K + +L D+V
Sbjct: 113 DENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQV 153
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 447 RVILVLRHFRHEDYVAVSRLL 385
R I +LRHFRHE+ +++ +L
Sbjct: 84 REIKLLRHFRHENIISILDIL 104
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.6 bits (56), Expect = 3.6
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = +1
Query: 88 LSKHDLSEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHH 267
LSK +S A+ + + RR KN+V +K ++ + L++ + +R Q+ +
Sbjct: 758 LSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQK-NQ 816
Query: 268 SLLAERQRLKERFAALYRHVFQNLRDPEGRPLSSGQYSLQ-QAADGNVVLVPKMPQHQDH 444
L + +R K +N + +G+ LS+G +Q + A + +L K + D
Sbjct: 817 QLRRDDKRNKRS---------KNDEESDGKSLSAGHVLMQLRKAANHALLFRKF--YDDE 865
Query: 445 PMNRTSDDEMERK 483
+ + + D M+ +
Sbjct: 866 KLKQMAKDIMQEE 878
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 106 SEAQLSLIRDIRRRGKNKVAAQNCRKRKLDQITSLADEV-RTVRDRKLRTQRDHHSLLAE 282
SE SL++DI + K+ + + CR+ KL+ + DE+ R + R + SL++E
Sbjct: 1205 SEFNFSLLKDITSKWKDLLESFECRRLKLE---NNKDEILRNFSEFAKRVNTETLSLISE 1261
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 136 IRRRGKNKVAAQNCRKRKLDQITSLADEVRTVRDRKLRTQRDHHSLLAERQRLKE 300
+ +RG N V A++ +K+K +QI +VR R ++ + H ++ ++L E
Sbjct: 2 LSKRGLNPVQAESRKKKKREQI-----KVREERAKRHEERLSHRNMSQMERQLSE 51
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 436 GAEAFSARGLRCRQPPAAASTGPRTAASLRGRGGSGKRV 320
G FSA + ++P A S+ P L RG +GK +
Sbjct: 548 GKRFFSAEAQKTQKPLKAVSSKPAKVVLLGARGYTGKNL 586
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 34 PLEVQDIINLPMDEFNERLSKH----DLSEAQLSLIRDIRRRGKNKVAAQN 174
PLE +INL ++E +E+ KH D Q+ L+R + + ++ N
Sbjct: 214 PLESSRLINLKLNEISEQEYKHLCLPDKEIIQMLLLRAYATKFRTRIRGVN 264
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 482 KPSTTTSDTWPRSAAPLPPSEGSTLECGQNYLTDRTI*MTPAKTDSCQP 628
K +TT+ +T P+PP+ GST ++ L D T + +T S QP
Sbjct: 220 KSTTTSKET---DFIPVPPAHGSTSMTSRSKLDDSTDNSSKPRT-SLQP 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,758
Number of Sequences: 5004
Number of extensions: 49176
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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