Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31853
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.73 
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              25   0.96 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   6.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 135 HQEAGQEQSGSTELPEAETGPDNLARGRGQ 224
           HQE+GQ +    E P    G D+     GQ
Sbjct: 54  HQESGQPKQVDNETPVVSQGSDSYTAPDGQ 83


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 13  RAKALGIPLEVQDIINLPMDEFNERLSKHDLSEAQLSLIRD 135
           RA+++ I  ++ D ++     F+E     D SEA++ LI +
Sbjct: 21  RARSVNIFQDIADCVDRSNMTFHELKKLRDSSEARIKLINE 61


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 153 EQSGSTELPEAETGPDN 203
           EQS S +LP  +  PDN
Sbjct: 348 EQSTSMDLPSDQVEPDN 364


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 153 EQSGSTELPEAETGPDN 203
           EQS S +LP  +  PDN
Sbjct: 348 EQSTSMDLPSDQVEPDN 364


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 RDPEGRPLSSGQYSLQQAADGNVVLVP 420
           R  +G PL+ G  + + + DGN ++ P
Sbjct: 79  RIQDGVPLTLGYVTREVSIDGNPLIAP 105


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 397 QPPAAASTGPRTAASLRGRGGSGK 326
           +P A    GP+   ++R RGG+ K
Sbjct: 31  RPAANTKLGPQRIHTVRTRGGNKK 54


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 RRGKNKVAAQNCRKR 186
           R+ + + AA NCRKR
Sbjct: 440 RKRRQREAAGNCRKR 454


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 500 SDTWPRSAAPLPPSEGS 550
           SDT P+ A P PP   S
Sbjct: 335 SDTPPKPAPPPPPPSSS 351


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 STKITR*TGLRMTRWRGKPSTTTSDTWPRSAAPLPPSE 544
           +T IT  T    T      +TTT +T   ++A  PP +
Sbjct: 655 ATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQ 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,659
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)